Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74880 | Canola | nucleus | 65.09 | 97.18 |
| Bra005074.1-P | Field mustard | nucleus | 64.62 | 96.48 |
| AT2G38880.8 | Thale cress | nucleus | 61.79 | 79.88 |
| CDY07691 | Canola | nucleus | 58.96 | 75.3 |
| Solyc04g009520.2.1 | Tomato | nucleus | 29.25 | 72.09 |
| CDY14422 | Canola | nucleus | 53.77 | 69.51 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 55.19 | 66.48 |
| PGSC0003DMT400082465 | Potato | nucleus | 41.04 | 65.91 |
| KRH34567 | Soybean | nucleus | 51.89 | 63.22 |
| KRG92229 | Soybean | nucleus | 51.42 | 63.01 |
| Solyc04g049910.2.1 | Tomato | nucleus | 48.58 | 62.42 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 30.66 | 61.32 |
| KXG22176 | Sorghum | nucleus | 50.47 | 59.44 |
| Zm00001d038397_P005 | Maize | nucleus | 49.53 | 58.99 |
| Zm00001d010574_P001 | Maize | nucleus | 50.94 | 57.75 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 52.83 | 57.73 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 49.53 | 57.69 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 49.06 | 57.14 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 49.06 | 57.14 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 30.66 | 57.02 |
| Os05t0463800-02 | Rice | nucleus | 49.53 | 56.76 |
| CDY18462 | Canola | nucleus | 45.75 | 55.43 |
| CDY21888 | Canola | nucleus | 41.04 | 55.41 |
| CDY20167 | Canola | nucleus | 41.04 | 55.06 |
| CDY30123 | Canola | nucleus | 41.51 | 53.33 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 30.19 | 52.46 |
| CDY72254 | Canola | nucleus | 44.34 | 50.54 |
| CDY18460 | Canola | nucleus | 46.23 | 50.52 |
| CDY41061 | Canola | nucleus | 41.51 | 47.83 |
| CDX75855 | Canola | nucleus | 41.51 | 47.31 |
| CDY25955 | Canola | nucleus | 41.51 | 47.06 |
| CDY28916 | Canola | nucleus | 41.04 | 46.77 |
| CDX82424 | Canola | nucleus | 41.51 | 46.56 |
| CDY40552 | Canola | nucleus | 40.57 | 46.49 |
| CDX95014 | Canola | nucleus | 28.77 | 46.21 |
| CDX79714 | Canola | nucleus | 48.11 | 45.95 |
| CDY53021 | Canola | nucleus | 33.49 | 45.81 |
| CDX83320 | Canola | nucleus | 33.02 | 44.87 |
| CDX73560 | Canola | nucleus | 47.64 | 44.1 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 49.53 | 41.67 |
| CDX80136 | Canola | nucleus | 33.02 | 40.7 |
| CDX77785 | Canola | cytosol | 25.0 | 39.55 |
| CDX78169 | Canola | nucleus | 47.64 | 39.3 |
| CDY46752 | Canola | nucleus | 48.58 | 38.58 |
| CDX89608 | Canola | nucleus | 37.26 | 37.8 |
| CDX93117 | Canola | nucleus | 37.26 | 37.8 |
| CDY37212 | Canola | nucleus | 36.32 | 37.02 |
| CDX81449 | Canola | nucleus | 35.85 | 36.54 |
| CDY41063 | Canola | nucleus | 31.13 | 31.58 |
| CDY25952 | Canola | nucleus | 30.66 | 31.4 |
| CDY17715 | Canola | nucleus | 32.55 | 29.87 |
| CDY00411 | Canola | nucleus | 32.08 | 29.57 |
| CDY01304 | Canola | nucleus | 32.08 | 29.44 |
| CDY38832 | Canola | nucleus | 25.94 | 24.02 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 18.4 | 23.64 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 18.4 | 23.49 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 18.4 | 23.08 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 18.4 | 23.08 |
| CDY68650 | Canola | nucleus | 30.19 | 21.33 |
| CDY30639 | Canola | nucleus | 32.08 | 19.88 |
| CDY44761 | Canola | cytosol | 17.92 | 15.83 |
| CDY40760 | Canola | nucleus | 17.45 | 14.92 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078DQC7 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDX91501 | ProteinID:CDX91501 |
| ProteinID:CDX91501.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00152863001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EDF411 | SEG:seg |
Description
BnaC04g06490D
Coordinates
chrLK031867:+:1454162..1456373
Molecular Weight (calculated)
23065.2 Da
IEP (calculated)
8.008
GRAVY (calculated)
-0.570
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPSSPAG DGGESGGGSV REQDRYLPIA NISRIMKKAL PPNGKIGKDA KDTVQECVSE FISFITSEAS DKCQKEKRKT VNGEDLLWAM ATLGFEDYLE
101: PLKVYLARYR EGDNKGSGKS GDGSNRDAAA GGVPNEDMPR DPVLVGCSRR FLFIRYDNSL KEGKKVCPQA LSSLSFVYGF QNLNMNGLTC ASNYTVRAPN
201: NISECFSCYG KK
101: PLKVYLARYR EGDNKGSGKS GDGSNRDAAA GGVPNEDMPR DPVLVGCSRR FLFIRYDNSL KEGKKVCPQA LSSLSFVYGF QNLNMNGLTC ASNYTVRAPN
201: NISECFSCYG KK
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE GDNKGSGKSG DGSNRDAGGG VSGEEMPSW
101: LKIYLARYRE GDNKGSGKSG DGSNRDAGGG VSGEEMPSW
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.