Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14540.1 | CDX93603 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDX95106 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDY06291 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDY22709 | AT1G07980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82424 | Canola | nucleus | 97.31 | 95.77 |
| Bra001615.1-P | Field mustard | nucleus | 94.62 | 93.12 |
| CDY20167 | Canola | nucleus | 77.96 | 91.77 |
| CDY21888 | Canola | nucleus | 77.42 | 91.72 |
| CDY30123 | Canola | nucleus | 80.11 | 90.3 |
| AT4G14540.1 | Thale cress | nucleus | 72.04 | 83.23 |
| Solyc12g006120.1.1 | Tomato | nucleus | 70.43 | 64.85 |
| CDY41061 | Canola | nucleus | 60.22 | 60.87 |
| CDY28916 | Canola | nucleus | 60.75 | 60.75 |
| CDX74880 | Canola | nucleus | 46.24 | 60.56 |
| CDY40552 | Canola | nucleus | 60.22 | 60.54 |
| CDY25955 | Canola | nucleus | 60.75 | 60.43 |
| PGSC0003DMT400010977 | Potato | nucleus | 64.52 | 59.11 |
| CDY18462 | Canola | nucleus | 51.08 | 54.29 |
| CDX95014 | Canola | nucleus | 38.17 | 53.79 |
| CDY07691 | Canola | nucleus | 46.77 | 52.41 |
| CDY14422 | Canola | nucleus | 45.16 | 51.22 |
| CDY72254 | Canola | nucleus | 50.0 | 50.0 |
| CDY18460 | Canola | nucleus | 51.08 | 48.97 |
| CDX83320 | Canola | nucleus | 40.32 | 48.08 |
| CDY53021 | Canola | nucleus | 39.25 | 47.1 |
| CDX93117 | Canola | nucleus | 50.54 | 44.98 |
| CDX89608 | Canola | nucleus | 50.54 | 44.98 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 70.43 | 44.86 |
| CDX77785 | Canola | cytosol | 32.26 | 44.78 |
| CDY37212 | Canola | nucleus | 49.46 | 44.23 |
| CDX81449 | Canola | nucleus | 48.92 | 43.75 |
| CDX79714 | Canola | nucleus | 52.15 | 43.69 |
| CDX80136 | Canola | nucleus | 39.78 | 43.02 |
| CDX91501 | Canola | nucleus | 47.31 | 41.51 |
| CDX73560 | Canola | nucleus | 51.08 | 41.48 |
| CDX78169 | Canola | nucleus | 51.08 | 36.97 |
| CDY25952 | Canola | nucleus | 40.86 | 36.72 |
| CDY46752 | Canola | nucleus | 52.69 | 36.7 |
| CDY41063 | Canola | nucleus | 40.86 | 36.36 |
| CDY00411 | Canola | nucleus | 39.25 | 31.74 |
| CDY17715 | Canola | nucleus | 39.25 | 31.6 |
| CDY01304 | Canola | nucleus | 39.25 | 31.6 |
| CDY38832 | Canola | nucleus | 32.8 | 26.64 |
| CDY68650 | Canola | nucleus | 37.63 | 23.33 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 20.43 | 23.03 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 20.43 | 22.89 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 19.89 | 21.89 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 19.89 | 21.89 |
| CDY30639 | Canola | nucleus | 38.17 | 20.76 |
| CDY44761 | Canola | cytosol | 19.89 | 15.42 |
| CDY40760 | Canola | nucleus | 19.89 | 14.92 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | ProteinID:AHI94920.1 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDX75855 | ProteinID:CDX75855 |
| ProteinID:CDX75855.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00123828001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0003EFCABA | GO:W6D5Y4 |
| UniProt:W6D5Y4 | SEG:seg | : | : | : | : |
Description
BnaC03g39380DBnaC03g39380D protein [Source:UniProtKB/TrEMBL;Acc:W6D5Y4]
Coordinates
chrLK031805:-:1180628..1181462
Molecular Weight (calculated)
19549.6 Da
IEP (calculated)
6.795
GRAVY (calculated)
-0.796
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNDSGG HKDGGSASSR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGERTTTGK QVDKEGGAGG NGNSSGGGGG GYNGGGRATA GGGMYGGIVT MGNHHQGHVY GGGMHHTQQS GSARAD
101: LKVYLQKYRE VEGERTTTGK QVDKEGGAGG NGNSSGGGGG GYNGGGRATA GGGMYGGIVT MGNHHQGHVY GGGMHHTQQS GSARAD
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.