Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400077500 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14540.1 | PGSC0003DMT400077500 | AT1G07980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g006120.1.1 | Tomato | nucleus | 76.85 | 77.23 |
| AT4G14540.1 | Thale cress | nucleus | 59.11 | 74.53 |
| CDY21888 | Canola | nucleus | 55.66 | 71.97 |
| CDY20167 | Canola | nucleus | 55.66 | 71.52 |
| Bra021147.1-P | Field mustard | nucleus | 54.68 | 70.7 |
| CDY30123 | Canola | nucleus | 57.14 | 70.3 |
| Bra027199.1-P | Field mustard | nucleus | 58.62 | 70.0 |
| CDX82424 | Canola | nucleus | 60.59 | 65.08 |
| CDX75855 | Canola | nucleus | 59.11 | 64.52 |
| PGSC0003DMT400004366 | Potato | nucleus | 43.84 | 63.57 |
| Bra001615.1-P | Field mustard | nucleus | 58.13 | 62.43 |
| PGSC0003DMT400057066 | Potato | nucleus | 54.68 | 60.0 |
| PGSC0003DMT400082465 | Potato | nucleus | 38.92 | 59.85 |
| PGSC0003DMT400058414 | Potato | nucleus | 36.45 | 54.41 |
| PGSC0003DMT400029608 | Potato | nucleus | 35.96 | 51.05 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 68.47 | 47.6 |
| PGSC0003DMT400095009 | Potato | nucleus | 43.84 | 46.6 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 27.09 | 45.83 |
| PGSC0003DMT400063671 | Potato | nucleus | 30.54 | 44.93 |
| PGSC0003DMT400037958 | Potato | nucleus | 38.42 | 43.82 |
| PGSC0003DMT400043176 | Potato | nucleus | 42.36 | 43.43 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 13.79 | 42.42 |
| PGSC0003DMT400035117 | Potato | nucleus | 33.99 | 38.55 |
| PGSC0003DMT400079574 | Potato | cytosol | 22.66 | 34.07 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 27.09 | 27.78 |
| PGSC0003DMT400035125 | Potato | cytosol | 24.14 | 25.93 |
| PGSC0003DMT400059368 | Potato | cytosol | 19.21 | 25.16 |
| PGSC0003DMT400035119 | Potato | nucleus | 19.7 | 24.84 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 19.21 | 24.68 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 18.72 | 23.9 |
| PGSC0003DMT400035129 | Potato | nucleus | 25.62 | 23.21 |
| PGSC0003DMT400057379 | Potato | nucleus | 19.7 | 23.12 |
| PGSC0003DMT400035028 | Potato | nucleus | 9.36 | 15.45 |
| PGSC0003DMT400035121 | Potato | nucleus | 10.34 | 13.64 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0ZYV7 | PFAM:PF00808 |
| EnsemblPlantsGene:PGSC0003DMG400004299 | PGSC:PGSC0003DMG400004299 | EnsemblPlants:PGSC0003DMT400010977 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000295FD73 | SEG:seg | : |
Description
Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400004299]
Coordinates
chr12:+:6260341..6260952
Molecular Weight (calculated)
16681.4 Da
IEP (calculated)
5.074
GRAVY (calculated)
-0.633
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNESGG HNNANSEGST REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEEYVE
101: PLKIYLAKYR EMEGEKTTMG RTGEKDGGGG DMAGGGGGVS SGGGYNGGGG GGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSGQ
201: GRR
101: PLKIYLAKYR EMEGEKTTMG RTGEKDGGGG DMAGGGGGVS SGGGYNGGGG GGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSGQ
201: GRR
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.