Factsheet for PGSC0003DMT400095009

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054150.1.1	Tomato	nucleus	92.15	93.62
PGSC0003DMT400082465	Potato	nucleus	39.27	56.82
PGSC0003DMT400004366	Potato	nucleus	40.84	55.71
GSMUA_Achr6P02820_001	Banana	nucleus	48.69	55.03
PGSC0003DMT400058414	Potato	nucleus	38.74	54.41
PGSC0003DMT400029608	Potato	nucleus	40.31	53.85
PGSC0003DMT400063671	Potato	nucleus	36.65	50.72
VIT_07s0031g01460.t01	Wine grape	nucleus	51.31	47.12
PGSC0003DMT400057066	Potato	nucleus	43.98	45.41
PGSC0003DMT400010977	Potato	nucleus	46.6	43.84
PGSC0003DMT400037958	Potato	nucleus	39.79	42.7
PGSC0003DMT400034611	Potato	mitochondrion	26.7	42.5
PGSC0003DMT400043176	Potato	nucleus	42.93	41.41
KRH59435	Soybean	nucleus	47.64	40.44
KRH43304	Soybean	nucleus	47.64	38.56
HORVU2Hr1G087460.1	Barley	nucleus	49.74	38.15
PGSC0003DMT400035193	Potato	cytosol, extracellular, nucleus	13.09	37.88
TraesCS2D01G358300.1	Wheat	nucleus	49.21	37.75
TraesCS2B01G378700.1	Wheat	nucleus	49.21	37.75
TraesCS2A01G359400.1	Wheat	nucleus	49.21	37.75
Zm00001d049485_P001	Maize	nucleus	50.79	37.45
PGSC0003DMT400079574	Potato	cytosol	25.65	36.3
EES14637	Sorghum	nucleus	50.79	35.27
PGSC0003DMT400035117	Potato	nucleus	30.37	32.4
Os08t0174500-01	Rice	nucleus	50.26	32.32
PGSC0003DMT400084724	Potato	endoplasmic reticulum, extracellular	28.8	27.78
PGSC0003DMT400035125	Potato	cytosol	24.08	24.34
PGSC0003DMT400057379	Potato	nucleus	21.99	24.28
PGSC0003DMT400035119	Potato	nucleus	20.42	24.22
PGSC0003DMT400035129	Potato	nucleus	24.61	20.98
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	16.75	20.25
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	16.75	20.13
PGSC0003DMT400059368	Potato	cytosol	16.23	20.0
PGSC0003DMT400035028	Potato	nucleus	9.42	14.63
PGSC0003DMT400035121	Potato	nucleus	9.95	12.34

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102588708	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791
GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0043565	GO:GO:0046982
GO:GO:0048579	GO:GO:0051512	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M1DVD6	PFAM:PF00808
EnsemblPlantsGene:PGSC0003DMG400044580	PGSC:PGSC0003DMG400044580	EnsemblPlants:PGSC0003DMT400095009	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF9	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0002950950	RefSeq:XP_006354714.1	SEG:seg

Description

Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400044580]

Coordinates

chr4:-:53783413..53783988

Molecular Weight (calculated)

21360.9 Da

IEP (calculated)

6.540

GRAVY (calculated)

-0.730

Length

191 amino acids

Sequence
(BLAST)

001: MTGKKTLTSP VESPLSGNTS DNFSKELDKF LPIANVSRIM KKSLPANAKI SKEAKETVQE CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE
101: NYVGPLKGYL NKYRESEGEK NIMARNDETS HEPIITSTNN IIGTSYNDNN NNVTKFSLAR PEFIQSYNNG NFSQNYGENL ASKANLHGVE W

Best Arabidopsis Sequence Match ( AT2G13570.1 )
(BLAST)

001: MTEESPEEDH GSPGVAETNP GSPSSKTNNN NNNNKEQDRF LPIANVGRIM KKVLPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW

Arabidopsis Description

NFYB7Uncharacterized protein At2g13570 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.