CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049485_P001	Maize	nucleus	86.55	91.89
GSMUA_Achr6P02820_001	Banana	nucleus	42.55	69.23
HORVU2Hr1G087460.1	Barley	nucleus	62.55	69.08
TraesCS2B01G378700.1	Wheat	nucleus	61.82	68.27
TraesCS2D01G358300.1	Wheat	nucleus	61.45	67.87
TraesCS2A01G359400.1	Wheat	nucleus	61.09	67.47
Os08t0174500-01	Rice	nucleus	72.0	66.67
VIT_07s0031g01460.t01	Wine grape	nucleus	41.82	55.29
OQU87808	Sorghum	nucleus	31.27	52.12
Solyc04g054150.1.1	Tomato	nucleus	34.91	51.06
PGSC0003DMT400095009	Potato	nucleus	35.27	50.79
KXG22176	Sorghum	nucleus	32.73	50.0
OQU78466	Sorghum	nucleus	24.36	48.91
EER99684	Sorghum	nucleus	38.55	48.62
EES04176	Sorghum	nucleus	30.91	46.7
EER94693	Sorghum	nucleus	38.18	46.67
KRH59435	Soybean	nucleus	36.73	44.89
KRH43304	Soybean	nucleus	36.73	42.8
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	22.55	42.47
KXG30848	Sorghum	nucleus	29.09	28.99
OQU76250	Sorghum	nucleus	22.91	24.14
EES05602	Sorghum	nucleus	17.09	23.86
EER89161	Sorghum	cytosol, mitochondrion, nucleus	16.0	22.45
EES13767	Sorghum	nucleus	14.18	13.13

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:8069671	UniProt:C5YHV2	InterPro:CBFA_NFYB_domain	EnsemblPlants:EES14637
ProteinID:EES14637	ProteinID:EES14637.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0040007	GO:GO:0043565	GO:GO:0046982	GO:GO:0048579	GO:GO:0051512
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF48	EnsemblPlantsGene:SORBI_3007G059500	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0001A87CD9	RefSeq:XP_002445142.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:6219130..6220244

Molecular Weight (calculated)

27668.1 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.365

Length

275 amino acids

Sequence
(BLAST)

001: MKSRKGYGHQ GHLLSPVGSP PSDNESGAVA AAATAGGGGG CGSSVGYCGG GGGESPAKEQ DRFLPIANVS RIMKRSLPAN AKISKEAKET VQECVSEFIS
101: FVTGEASDKC QREKRKTING DDLLWAMTTL GFEAYVSPLK SYLNRYREAE GEKAAVLGGA RHGDGAVDDG PLAAGGAVPP SGAAGGDRAG HDGAADADAH
201: VGLMMGGASS VVGFGAGGGA AASYYTATAA RKAYGAGEGS TKVMEFEGIA GEEENGGVQR GRGFANNHLH GAVQW

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.