Factsheet for Zm00001d049485_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14637	Sorghum	nucleus	91.89	86.55
HORVU2Hr1G087460.1	Barley	nucleus	66.8	69.48
GSMUA_Achr6P02820_001	Banana	nucleus	45.17	69.23
TraesCS2B01G378700.1	Wheat	nucleus	66.02	68.67
TraesCS2A01G359400.1	Wheat	nucleus	65.64	68.27
TraesCS2D01G358300.1	Wheat	nucleus	65.64	68.27
Os08t0174500-01	Rice	nucleus	74.52	64.98
Zm00001d001775_P001	Maize	nucleus	19.69	56.04
VIT_07s0031g01460.t01	Wine grape	nucleus	43.63	54.33
Zm00001d009636_P001	Maize	nucleus	26.64	53.49
Solyc04g054150.1.1	Tomato	nucleus	37.07	51.06
PGSC0003DMT400095009	Potato	nucleus	37.45	50.79
Zm00001d022099_P001	Maize	nucleus	40.54	49.53
Zm00001d038397_P005	Maize	nucleus	33.59	48.88
Zm00001d006813_P001	Maize	nucleus	38.61	48.78
Zm00001d011915_P001	Maize	nucleus	31.27	47.37
Zm00001d039957_P001	Maize	nucleus	25.1	47.1
Zm00001d042968_P002	Maize	extracellular, nucleus	33.98	46.32
Zm00001d010574_P001	Maize	nucleus	33.2	45.99
Zm00001d029505_P001	Maize	nucleus	39.0	45.5
Zm00001d042196_P001	Maize	nucleus	31.27	45.25
KRH59435	Soybean	nucleus	39.0	44.89
Zm00001d030151_P001	Maize	mitochondrion	13.9	43.9
KRH43304	Soybean	nucleus	39.0	42.8
Zm00001d042197_P001	Maize	plastid	24.71	38.55
Zm00001d051697_P001	Maize	nucleus	31.27	30.68
Zm00001d017898_P001	Maize	nucleus	31.27	29.14
Zm00001d045772_P001	Maize	nucleus, plastid	25.1	24.81
Zm00001d017899_P001	Maize	nucleus	17.76	23.35
Zm00001d019101_P001	Maize	nucleus	15.44	20.3
Zm00001d012445_P001	Maize	nucleus	30.89	15.15
Zm00001d050242_P002	Maize	plastid	15.06	13.13
Zm00001d032328_P005	Maize	extracellular, plastid	14.29	12.29

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:103653048	MapMan:15.5.51.2	ProteinID:AQK50653.1	InterPro:CBFA_NFYB_domain	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009653
GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0043565
GO:GO:0046982	GO:GO:0048579	GO:GO:0051512	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K7TT56
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF48	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0001E40128	EnsemblPlantsGene:Zm00001d049485	EnsemblPlants:Zm00001d049485_P001	EnsemblPlants:Zm00001d049485_T001	SEG:seg

Description

CCAAT-DR1-transcription factor 5Nuclear transcription factor Y subunit B-3

Coordinates

chr4:+:31972821..31973600

Molecular Weight (calculated)

26303.5 Da

IEP (calculated)

6.165

GRAVY (calculated)

-0.456

Length

259 amino acids

Sequence
(BLAST)

001: MKNRKGYGHQ GHLLSPVGSP LSDNESGAAA AAGGGGCGSS VGYCGGGGGE SPAKEQDRFL PIANVSRIMK RSLPANAKIS KEAKETVQEC VSEFISFVTG
101: EASDKCQREK RKTINGDDLL WAMTTLGFEA YVAPLKSYLN RYREAEGEKA AVLGGGARHG EGGGAADDAG PLAAGGGAGD GVDRAGHDDD AHVGLMMGAS
201: SVGFGSGGGA APSYYAAASR KAYGAGEGSK VMEFEGEEEN GGVQRGRGFA SHLHGAVQW

Best Arabidopsis Sequence Match ( AT2G37060.1 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.