Factsheet for GSMUA_Achr6P02820_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	43.79	56.49
GSMUA_Achr5P28380_001	Banana	nucleus	44.38	53.96
GSMUA_Achr2P13670_001	Banana	nucleus	53.25	53.89
VIT_07s0031g01460.t01	Wine grape	nucleus	64.5	52.4
Solyc04g054150.1.1	Tomato	nucleus	54.44	48.94
PGSC0003DMT400095009	Potato	nucleus	55.03	48.69
GSMUA_Achr11P...	Banana	nucleus	47.34	48.19
GSMUA_Achr4P27850_001	Banana	nucleus	55.03	48.19
GSMUA_Achr5P17480_001	Banana	nucleus	43.79	45.96
TraesCS2D01G358300.1	Wheat	nucleus	66.86	45.38
HORVU2Hr1G087460.1	Barley	nucleus	66.86	45.38
GSMUA_AchrUn_...	Banana	nucleus	53.85	45.27
GSMUA_Achr8P28050_001	Banana	nucleus	42.01	45.22
Zm00001d049485_P001	Maize	nucleus	69.23	45.17
TraesCS2B01G378700.1	Wheat	nucleus	66.27	44.98
GSMUA_Achr8P17450_001	Banana	nucleus	51.48	44.85
TraesCS2A01G359400.1	Wheat	nucleus	65.68	44.58
GSMUA_Achr8P10020_001	Banana	nucleus	46.15	44.57
KRH59435	Soybean	nucleus	57.99	43.56
GSMUA_Achr6P35500_001	Banana	nucleus	36.09	42.96
EES14637	Sorghum	nucleus	69.23	42.55
GSMUA_Achr8P21910_001	Banana	cytosol	29.59	42.37
KRH43304	Soybean	nucleus	57.99	41.53
GSMUA_Achr8P05300_001	Banana	nucleus	37.28	41.18
Os08t0174500-01	Rice	nucleus	69.23	39.39
GSMUA_Achr9P09260_001	Banana	nucleus	39.05	37.71
GSMUA_Achr3P04310_001	Banana	nucleus	40.24	32.08
GSMUA_Achr1P20700_001	Banana	cytosol	7.1	22.64
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	20.12	19.65
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	12.43	17.8

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0043565	GO:GO:0046982	GO:GO:0048579
GO:GO:0051512	EnsemblPlantsGene:GSMUA_Achr6G02820_001	EnsemblPlants:GSMUA_Achr6P02820_001	EnsemblPlants:GSMUA_Achr6T02820_001	InterPro:Histone-fold	InterPro:IPR009072
UniProt:M0T3N0	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF48
SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0002968146	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G02820_001]

Coordinates

chr6:+:1924889..1925398

Molecular Weight (calculated)

18732.8 Da

IEP (calculated)

7.626

GRAVY (calculated)

-0.851

Length

169 amino acids

Sequence
(BLAST)

001: MKGRRSRHHL GTGGSHQLVS DDESGHASDS SPKEQDRFLP VANVSRIMKR SLPANAKISK EAKETVQECV SEFISFITGE ASDKCQREKR KTINGDDLLW
101: AMTTLGFDSY VGPLKAYLNK YRETEGEKNL MARHGEPPSN EPDDASPAIP SFAASGFYSV GEAWDQRKK

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.