Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P35500_001 | Banana | nucleus | 58.82 | 63.38 |
| GSMUA_Achr9P09260_001 | Banana | nucleus | 67.97 | 59.43 |
| GSMUA_Achr4P27850_001 | Banana | nucleus | 60.78 | 48.19 |
| GSMUA_Achr2P13670_001 | Banana | nucleus | 51.63 | 47.31 |
| KRG98494 | Soybean | nucleus | 54.9 | 44.68 |
| KRH46369 | Soybean | nucleus | 55.56 | 44.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.17 | 44.28 |
| GSMUA_Achr11P... | Banana | nucleus | 37.25 | 43.51 |
| GSMUA_Achr5P28380_001 | Banana | nucleus | 38.56 | 42.45 |
| VIT_19s0015g00440.t01 | Wine grape | nucleus | 58.17 | 42.38 |
| PGSC0003DMT400057066 | Potato | nucleus | 50.98 | 42.16 |
| Solyc07g065500.1.1 | Tomato | nucleus | 49.67 | 41.76 |
| GSMUA_Achr6P02820_001 | Banana | nucleus | 41.18 | 37.28 |
| GSMUA_Achr11P... | Banana | nucleus | 37.91 | 34.94 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 43.14 | 34.02 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 37.25 | 32.57 |
| GSMUA_Achr8P28050_001 | Banana | nucleus | 33.33 | 32.48 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 32.68 | 31.06 |
| GSMUA_Achr1P20700_001 | Banana | cytosol | 9.15 | 26.42 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 20.26 | 26.27 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 33.33 | 24.06 |
| GSMUA_Achr9P00790_001 | Banana | cytosol, nucleus, peroxisome | 15.69 | 13.87 |
| GSMUA_Achr1P20710_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 7.84 | 10.17 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P05300_001 | EnsemblPlants:GSMUA_Achr8T05300_001 | EnsemblPlantsGene:GSMUA_Achr8G05300_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI0002968918 | UniProt:M0TMT3 | MapMan:35.1 | : |
Description
Putative Nuclear transcription factor Y subunit B-3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G05300_001]
Coordinates
chr8:+:3444943..3445637
Molecular Weight (calculated)
15755.3 Da
IEP (calculated)
7.601
GRAVY (calculated)
-0.554
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDSDNESGG PNNAAGSGGE FSSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE CVSEFISFDY VEPLKVYLQR FREMEGEKMG ASSGSHKEAG
101: GAGVGMYGGG GAMYGSPTSA TSYHHQMSMG GKGSSAGGAG GSSSAGFGRQ GRV
101: GAGVGMYGGG GAMYGSPTSA TSYHHQMSMG GKGSSAGGAG GSSSAGFGRQ GRV
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.