Factsheet for VIT_19s0015g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98494	Soybean	nucleus	61.43	68.62
KRH46369	Soybean	nucleus	62.38	68.59
VIT_06s0004g03490.t01	Wine grape	nucleus	43.33	68.42
Solyc07g065500.1.1	Tomato	nucleus	58.1	67.03
PGSC0003DMT400057066	Potato	nucleus	59.05	67.03
VIT_00s0259g00180.t01	Wine grape	nucleus	65.71	66.67
VIT_00s1287g00010.t01	Wine grape	nucleus	65.71	63.3
GSMUA_Achr6P35500_001	Banana	nucleus	40.95	60.56
GSMUA_AchrUn_...	Banana	nucleus	57.62	60.2
VIT_08s0040g03260.t01	Wine grape	nucleus	44.76	58.39
GSMUA_Achr8P05300_001	Banana	nucleus	42.38	58.17
GSMUA_Achr9P09260_001	Banana	nucleus	46.19	55.43
VIT_05s0020g01350.t01	Wine grape	nucleus	36.19	55.07
VIT_13s0019g03600.t01	Wine grape	nucleus	45.24	53.98
VIT_14s0060g02660.t01	Wine grape	nucleus	32.86	46.94
VIT_12s0057g01010.t01	Wine grape	nucleus	65.24	46.92
VIT_07s0104g01640.t01	Wine grape	nucleus	38.57	46.29
VIT_01s0010g01910.t01	Wine grape	cytosol	32.38	44.74
VIT_07s0031g01460.t01	Wine grape	nucleus	43.81	44.23
VIT_01s0010g01940.t01	Wine grape	cytosol	29.05	40.13
VIT_00s0956g00020.t01	Wine grape	nucleus	38.1	37.91
VIT_19s0015g00580.t01	Wine grape	nucleus	33.81	33.97
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	30.0	29.3
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	19.05	25.81

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100251431	wikigene:100251431	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ProteinID:CBI39730
ProteinID:CBI39730.3	UniProt:D7UAG5	EMBL:FN596747	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0043565
GO:GO:0046982	GO:GO:0048574	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100251431	wikigene:LOC100251431
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF87	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00015CB726	ArrayExpress:VIT_19s0015g00440	EnsemblPlantsGene:VIT_19s0015g00440	EnsemblPlants:VIT_19s0015g00440.t01	RefSeq:XP_003634760
RefSeq:XP_003634760.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:8458932..8459994

Molecular Weight (calculated)

22281.0 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.695

Length

210 amino acids

Sequence
(BLAST)

001: MADSDNDSGG HNNNAGSELS PREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEDYV
101: DPLKIYLHRF REMEGEKTSM GRQGEKDGPS AAGGNGSVVN PANTGSGGFG ETGMYGAIPS TMMMMGHHQH QGHVYGSSAY HPMAAAGANF GSGKANSGHP
201: GSGPSAGRPR

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.