Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034611 | Potato | mitochondrion | 40.76 | 71.67 |
| KRH51197 | Soybean | nucleus | 70.62 | 66.82 |
| KRH01950 | Soybean | nucleus | 69.67 | 65.04 |
| Solyc11g012750.1.1 | Tomato | nucleus | 45.97 | 63.82 |
| CDY25952 | Canola | nucleus | 55.92 | 57.0 |
| CDY41063 | Canola | nucleus | 55.92 | 56.46 |
| Bra017471.1-P | Field mustard | nucleus | 54.5 | 55.02 |
| AT5G47670.3 | Thale cress | nucleus | 59.24 | 53.42 |
| CDY17715 | Canola | nucleus | 58.29 | 53.25 |
| Bra024924.1-P | Field mustard | nucleus | 58.29 | 53.25 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 16.59 | 53.03 |
| PGSC0003DMT400079574 | Potato | cytosol | 33.65 | 52.59 |
| PGSC0003DMT400035117 | Potato | nucleus | 44.08 | 51.96 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 31.75 | 50.38 |
| Solyc04g015060.1.1 | Tomato | nucleus | 56.4 | 50.21 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 48.34 | 48.11 |
| VIT_05s0020g01350.t01 | Wine grape | nucleus | 30.81 | 47.1 |
| VIT_19s0015g00580.t01 | Wine grape | nucleus | 44.55 | 44.98 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 31.75 | 41.61 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 28.91 | 41.5 |
| Solyc05g005440.1.1 | Tomato | cytosol | 40.76 | 41.35 |
| PGSC0003DMT400035125 | Potato | cytosol | 36.97 | 41.27 |
| PGSC0003DMT400035119 | Potato | nucleus | 31.28 | 40.99 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 28.91 | 40.13 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 33.18 | 39.77 |
| VIT_07s0104g01640.t01 | Wine grape | nucleus | 32.7 | 39.43 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 36.02 | 38.38 |
| VIT_19s0015g00440.t01 | Wine grape | nucleus | 37.91 | 38.1 |
| PGSC0003DMT400035129 | Potato | nucleus | 40.28 | 37.95 |
| VIT_00s0259g00180.t01 | Wine grape | nucleus | 36.97 | 37.68 |
| VIT_19s0015g00590.t01 | Wine grape | cytosol, mitochondrion, nucleus | 38.39 | 37.67 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 26.54 | 36.84 |
| PGSC0003DMT400035028 | Potato | nucleus | 21.33 | 36.59 |
| VIT_00s1287g00010.t01 | Wine grape | nucleus | 36.97 | 35.78 |
| Solyc05g005350.1.1 | Tomato | nucleus | 35.07 | 33.79 |
| VIT_07s0031g01460.t01 | Wine grape | nucleus | 33.18 | 33.65 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 34.6 | 33.33 |
| Solyc05g005360.1.1 | Tomato | nucleus | 35.07 | 33.04 |
| Solyc05g005370.1.1 | Tomato | nucleus | 34.12 | 32.14 |
| PGSC0003DMT400035121 | Potato | nucleus | 22.27 | 30.52 |
| Solyc05g005380.1.1 | Tomato | plastid | 48.82 | 28.85 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 36.97 | 26.71 |
| VIT_17s0000g04350.t01 | Wine grape | cytosol, mitochondrion, nucleus | 17.06 | 23.23 |
| Solyc05g005340.2.1 | Tomato | extracellular | 12.32 | 20.97 |
| Solyc02g032180.1.1 | Tomato | nucleus | 25.12 | 18.47 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100855401 | wikigene:100855401 | MapMan:15.5.51.2 | EMBL:AM428051 | ProteinID:CAN75736 |
| ProteinID:CAN75736.1 | InterPro:CBFA_NFYB_domain | ProteinID:CBI23532 | ProteinID:CBI23532.3 | UniProt:D7SZ49 | EMBL:FN595315 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | EntrezGene:LOC100855401 | wikigene:LOC100855401 | EMBL:MG581425 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00015CE023 |
| ArrayExpress:VIT_00s0956g00020 | EnsemblPlantsGene:VIT_00s0956g00020 | EnsemblPlants:VIT_00s0956g00020.t01 | unigene:Vvi.4775 | RefSeq:XP_003635503 | RefSeq:XP_003635503.1 |
Description
LEC1 [Source:UniProtKB/TrEMBL;Acc:D7SZ49]
Coordinates
chrUn:-:37116981..37119429
Molecular Weight (calculated)
23712.1 Da
IEP (calculated)
6.251
GRAVY (calculated)
-0.580
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: METGGFHGYR KLSKTTSGMK LTEPNEKQPE SNQMSNNSAM EDTECTVREQ DRFMPIANVI RIMRKILPPH AKISDDAKET IQECVSEYIS FITGEANERC
101: QREQRKTITA EDVLWAMSKL GFDDYMEPLT MYLHRYRELE GDRATIRSEP VVKRNVEFGG LSVAAFAPAF HMGHHQGFFG AAAMGGYLKE APNAGTSQAA
201: VASLEPYAQY K
101: QREQRKTITA EDVLWAMSKL GFDDYMEPLT MYLHRYRELE GDRATIRSEP VVKRNVEFGG LSVAAFAPAF HMGHHQGFFG AAAMGGYLKE APNAGTSQAA
201: VASLEPYAQY K
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.