Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079574 | Potato | cytosol | 50.96 | 78.52 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 26.44 | 57.89 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 63.94 | 55.88 |
| Solyc10g009440.2.1 | Tomato | plastid | 62.98 | 55.04 |
| Solyc11g012750.1.1 | Tomato | nucleus | 39.9 | 54.61 |
| Solyc04g009520.2.1 | Tomato | nucleus | 19.23 | 46.51 |
| Solyc05g005360.1.1 | Tomato | nucleus | 48.08 | 44.64 |
| Solyc05g005350.1.1 | Tomato | nucleus | 46.15 | 43.84 |
| Solyc05g005370.1.1 | Tomato | nucleus | 47.12 | 43.75 |
| Solyc04g015060.1.1 | Tomato | nucleus | 48.56 | 42.62 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 41.35 | 40.76 |
| Solyc09g074760.1.1 | Tomato | nucleus | 26.44 | 39.86 |
| KRH51197 | Soybean | nucleus | 41.83 | 39.01 |
| KRH01950 | Soybean | nucleus | 41.83 | 38.5 |
| Solyc01g067130.2.1 | Tomato | plastid | 25.48 | 38.41 |
| CDY25952 | Canola | nucleus | 37.02 | 37.2 |
| Bra017471.1-P | Field mustard | nucleus | 37.02 | 36.84 |
| CDY41063 | Canola | nucleus | 37.02 | 36.84 |
| Bra024924.1-P | Field mustard | nucleus | 39.42 | 35.5 |
| CDY17715 | Canola | nucleus | 39.42 | 35.5 |
| AT5G47670.3 | Thale cress | nucleus | 39.9 | 35.47 |
| Solyc04g049910.2.1 | Tomato | nucleus | 27.88 | 35.15 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 35.1 | 34.43 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 35.58 | 33.79 |
| Solyc09g007290.2.1 | Tomato | nucleus | 20.19 | 32.56 |
| Solyc06g009010.1.1 | Tomato | nucleus | 26.92 | 31.46 |
| Solyc07g065500.1.1 | Tomato | nucleus | 27.4 | 31.32 |
| Solyc12g006120.1.1 | Tomato | nucleus | 29.33 | 30.2 |
| Solyc01g099320.2.1 | Tomato | nucleus | 20.67 | 29.45 |
| Solyc02g032180.1.1 | Tomato | nucleus | 39.9 | 28.92 |
| Solyc04g054150.1.1 | Tomato | nucleus | 25.96 | 28.72 |
| Solyc05g005340.2.1 | Tomato | extracellular | 16.35 | 27.42 |
| Solyc05g005380.1.1 | Tomato | plastid | 46.63 | 27.17 |
| Solyc07g065580.1.1 | Tomato | nucleus | 21.63 | 25.28 |
| Solyc12g027650.1.1 | Tomato | nucleus | 24.52 | 24.52 |
| Solyc07g065570.1.1 | Tomato | nucleus | 21.15 | 23.4 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 12.98 | 20.61 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 12.98 | 20.45 |
| Solyc12g038390.1.1 | Tomato | cytosol | 5.29 | 13.41 |
Protein Annotations
| EnsemblPlants:Solyc05g005440.1.1 | EnsemblPlantsGene:Solyc05g005440.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | PFAM:PF00808 | PRINTS:PR00615 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI0002766E0C | UniProt:K4BW75 | MapMan:15.5.51.2 | : |
Description
No Description!
Coordinates
chr5:-:331734..333675
Molecular Weight (calculated)
23159.2 Da
IEP (calculated)
4.948
GRAVY (calculated)
-0.522
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGNLVGSG DGGFHSYCRS PQRTSARSPS PDMEMSLELP AHLEQTIAAN VEHSERTIRE HDRFMPITNV IRIMRKILPP NVQISDGFKL MIQECVSEFI
101: GFITGEANNC CQLDQRKTIT AEDLLRALDR FGYDDYVETL ALYLHRYREY DGGCGSTRRA RLLLRSSMVN PASGCNLTSY QGDASNGSTS QGDAVDIEVQ
201: SPAKETKE
101: GFITGEANNC CQLDQRKTIT AEDLLRALDR FGYDDYVETL ALYLHRYREY DGGCGSTRRA RLLLRSSMVN PASGCNLTSY QGDASNGSTS QGDAVDIEVQ
201: SPAKETKE
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.