Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037958 | Potato | nucleus | 94.38 | 94.38 |
| Solyc09g074760.1.1 | Tomato | nucleus | 58.43 | 75.36 |
| KRH71548 | Soybean | nucleus | 60.11 | 72.79 |
| KRH31905 | Soybean | cytosol, mitochondrion, nucleus | 58.43 | 71.72 |
| Solyc01g067130.2.1 | Tomato | plastid | 50.56 | 65.22 |
| Solyc04g009520.2.1 | Tomato | nucleus | 31.46 | 65.12 |
| Solyc01g099320.2.1 | Tomato | nucleus | 48.88 | 59.59 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 52.81 | 58.39 |
| GSMUA_Achr11P... | Banana | nucleus | 52.81 | 56.63 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 52.81 | 53.71 |
| Os01t0935200-01 | Rice | nucleus | 51.69 | 51.98 |
| Zm00001d011915_P001 | Maize | nucleus | 48.88 | 50.88 |
| EES04176 | Sorghum | nucleus | 51.69 | 50.55 |
| Zm00001d042196_P001 | Maize | nucleus | 50.56 | 50.28 |
| HORVU3Hr1G098500.1 | Barley | nucleus | 48.88 | 47.54 |
| TraesCSU01G203900.1 | Wheat | nucleus | 48.88 | 47.54 |
| TraesCSU01G051000.1 | Wheat | nucleus | 48.88 | 47.54 |
| TraesCSU01G050900.1 | Wheat | nucleus | 48.88 | 47.54 |
| TraesCS3D01G450100.1 | Wheat | nucleus | 48.88 | 47.28 |
| TraesCS3A01G457100.1 | Wheat | nucleus | 48.88 | 45.79 |
| Solyc09g007290.2.1 | Tomato | nucleus | 33.15 | 45.74 |
| Solyc04g049910.2.1 | Tomato | nucleus | 39.33 | 42.42 |
| Solyc11g012750.1.1 | Tomato | nucleus | 35.39 | 41.45 |
| Solyc04g054150.1.1 | Tomato | nucleus | 43.26 | 40.96 |
| Solyc07g065500.1.1 | Tomato | nucleus | 41.01 | 40.11 |
| Solyc12g006120.1.1 | Tomato | nucleus | 44.38 | 39.11 |
| Solyc12g027650.1.1 | Tomato | nucleus | 45.51 | 38.94 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 20.22 | 37.89 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 39.33 | 29.41 |
| Solyc04g015060.1.1 | Tomato | nucleus | 37.08 | 27.85 |
| Solyc10g009440.2.1 | Tomato | plastid | 37.08 | 27.73 |
| Solyc05g005440.1.1 | Tomato | cytosol | 31.46 | 26.92 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 30.34 | 24.66 |
| Solyc07g065570.1.1 | Tomato | nucleus | 25.84 | 24.47 |
| Solyc07g065580.1.1 | Tomato | nucleus | 24.16 | 24.16 |
| Solyc05g005350.1.1 | Tomato | nucleus | 27.53 | 22.37 |
| Solyc05g005360.1.1 | Tomato | nucleus | 28.09 | 22.32 |
| Solyc05g005370.1.1 | Tomato | nucleus | 27.53 | 21.88 |
| Solyc05g005380.1.1 | Tomato | plastid | 36.52 | 18.21 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 12.92 | 17.56 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 12.92 | 17.42 |
| Solyc05g005340.2.1 | Tomato | extracellular | 10.11 | 14.52 |
| Solyc12g038390.1.1 | Tomato | cytosol | 5.62 | 12.2 |
| Solyc02g032180.1.1 | Tomato | nucleus | 19.1 | 11.85 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:K4C3T1 | PFAM:PF00808 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc06g009010.1 |
| EnsemblPlants:Solyc06g009010.1.1 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0002766B05 | : | : | : |
Description
No Description!
Coordinates
chr6:-:2953980..2954516
Molecular Weight (calculated)
20447.1 Da
IEP (calculated)
5.395
GRAVY (calculated)
-0.843
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDNNINILR SKYDRESSNY NSISEDGLIY KEQDRLLPIA NVGRIMKQIL PPNAKISKEA KETMQECVSE FISFVTGEAS DKCHNEKRKT LNGDDICWAL
101: GSLGFDDYVE PLKRYLHKYR ELEGERINQS KGVGLGNNIE DQRGRDDDEL TQRGSTIPFK ITIMDHKGEN NFLPTRPY
101: GSLGFDDYVE PLKRYLHKYR ELEGERINQS KGVGLGNNIE DQRGRDDDEL TQRGSTIPFK ITIMDHKGEN NFLPTRPY
001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
Arabidopsis Description
NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.