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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g005390.1.1 Tomato nucleus, plastid 89.5 89.5
Solyc02g032190.1.1 Tomato cytosol, nucleus, plastid 30.25 75.79
Solyc05g005440.1.1 Tomato cytosol 55.04 62.98
Solyc11g012750.1.1 Tomato nucleus 36.97 57.89
Solyc04g009520.2.1 Tomato nucleus 20.59 56.98
Solyc04g015060.1.1 Tomato nucleus 48.32 48.52
Solyc05g005350.1.1 Tomato nucleus 44.54 48.4
Solyc05g005360.1.1 Tomato nucleus 45.38 48.21
Solyc05g005370.1.1 Tomato nucleus 44.54 47.32
Solyc09g007290.2.1 Tomato nucleus 23.53 43.41
Solyc01g067130.2.1 Tomato plastid 24.79 42.75
Solyc09g074760.1.1 Tomato nucleus 24.79 42.75
Solyc04g049910.2.1 Tomato nucleus 28.15 40.61
Solyc07g065500.1.1 Tomato nucleus 29.83 39.01
Solyc06g009010.1.1 Tomato nucleus 27.73 37.08
VIT_19s0015g00580.t01 Wine grape nucleus 32.35 36.84
Solyc05g005340.2.1 Tomato extracellular 18.91 36.29
Solyc12g006120.1.1 Tomato nucleus 30.67 36.14
Solyc05g015550.1.1 Tomato mitochondrion 32.77 35.62
Solyc01g099320.2.1 Tomato nucleus 21.01 34.25
VIT_19s0015g00590.t01 Wine grape cytosol, mitochondrion, nucleus 30.67 33.95
Solyc04g054150.1.1 Tomato nucleus 25.21 31.91
Solyc05g005380.1.1 Tomato plastid 47.06 31.37
Solyc02g032180.1.1 Tomato nucleus 36.13 29.97
Solyc12g027650.1.1 Tomato nucleus 25.21 28.85
Solyc07g065580.1.1 Tomato nucleus 21.01 28.09
Solyc07g065570.1.1 Tomato nucleus 21.85 27.66
Solyc06g069310.2.1 Tomato cytosol, mitochondrion, nucleus 10.5 19.08
Solyc03g114400.2.1 Tomato cytosol, nucleus, plastid 10.5 18.94
Solyc12g038390.1.1 Tomato cytosol 3.78 10.98
Protein Annotations
EnsemblPlants:Solyc10g009440.2.1EnsemblPlantsGene:Solyc10g009440.2Gene3D:1.10.20.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0046982InterPro:CBFA_NFYB_domain
InterPro:Histone-foldInterPro:IPR009072PANTHER:PTHR11064PANTHER:PTHR11064:SF20PFAM:PF00808PRINTS:PR00615
SEG:segSUPFAM:SSF47113UniParc:UPI000276BDB0UniProt:K4CYC0MapMan:15.5.51.2:
Description
No Description!
Coordinates
chr10:-:3535781..3537995
Molecular Weight (calculated)
26379.7 Da
IEP (calculated)
4.876
GRAVY (calculated)
-0.685
Length
238 amino acids
Sequence
(BLAST)
001: MANNNNAGSG NGGFPSYRRS PQLTLARSPS SDMERSVELP SHLNQEIAAN EGDSECTIRE QDRLMPIANV VRNMRKVLPP NAKIADESKL VIQECVSEFI
101: GFVTGEANDR CKLEKRKTIT AEDLLWSMNS LGFDDYVEPL TLYLQRYREF DGGDRGSLRG DPFPLKRPTV NPASGYSLIP NHLPPNFPMA HHNGYYVYPP
201: PVDNSYRQGD ASSGSTSHEF AVAAVDRDVE SPAEKSDD
Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.