Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g089500.2.1 | |
| Solyc05g024010.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47810.1 | Solyc05g024010.2.1 | AT1G28050.1 | 17138697 |
| AT2G47810.1 | Solyc02g089500.2.1 | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029608 | Potato | nucleus | 94.2 | 90.91 |
| Solyc04g009520.2.1 | Tomato | nucleus | 39.86 | 63.95 |
| Solyc01g067130.2.1 | Tomato | plastid | 59.42 | 59.42 |
| Solyc06g009010.1.1 | Tomato | nucleus | 75.36 | 58.43 |
| CDY53021 | Canola | nucleus | 61.59 | 54.84 |
| Bra000462.1-P | Field mustard | nucleus | 60.87 | 53.85 |
| CDX83320 | Canola | nucleus | 60.87 | 53.85 |
| AT2G47810.1 | Thale cress | nucleus | 62.32 | 53.75 |
| Bra004428.1-P | Field mustard | nucleus | 58.7 | 52.26 |
| Solyc01g099320.2.1 | Tomato | nucleus | 54.35 | 51.37 |
| CDX80136 | Canola | nucleus | 61.59 | 49.42 |
| Solyc09g007290.2.1 | Tomato | nucleus | 39.86 | 42.64 |
| Solyc04g054150.1.1 | Tomato | nucleus | 55.8 | 40.96 |
| Solyc11g012750.1.1 | Tomato | nucleus | 44.93 | 40.79 |
| Solyc04g049910.2.1 | Tomato | nucleus | 48.55 | 40.61 |
| Solyc07g065500.1.1 | Tomato | nucleus | 50.72 | 38.46 |
| Solyc12g006120.1.1 | Tomato | nucleus | 53.62 | 36.63 |
| Solyc12g027650.1.1 | Tomato | nucleus | 52.9 | 35.1 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 23.91 | 34.74 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 47.83 | 27.73 |
| Solyc05g005440.1.1 | Tomato | cytosol | 39.86 | 26.44 |
| Solyc04g015060.1.1 | Tomato | nucleus | 44.2 | 25.74 |
| Solyc07g065580.1.1 | Tomato | nucleus | 32.61 | 25.28 |
| Solyc07g065570.1.1 | Tomato | nucleus | 34.06 | 25.0 |
| Solyc10g009440.2.1 | Tomato | plastid | 42.75 | 24.79 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 38.41 | 24.2 |
| Solyc05g005350.1.1 | Tomato | nucleus | 32.61 | 20.55 |
| Solyc05g005360.1.1 | Tomato | nucleus | 32.61 | 20.09 |
| Solyc05g005370.1.1 | Tomato | nucleus | 31.88 | 19.64 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 16.67 | 17.56 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 16.67 | 17.42 |
| Solyc05g005380.1.1 | Tomato | plastid | 44.2 | 17.09 |
| Solyc05g005340.2.1 | Tomato | extracellular | 13.04 | 14.52 |
| Solyc12g038390.1.1 | Tomato | cytosol | 7.97 | 13.41 |
| Solyc02g032180.1.1 | Tomato | nucleus | 21.01 | 10.1 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:K4CV53 |
| PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 |
| EnsemblPlantsGene:Solyc09g074760.1 | EnsemblPlants:Solyc09g074760.1.1 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000276B59D | : | : |
Description
Nuclear transcription factor Y subunit B-5 [Source:Projected from Arabidopsis thaliana (AT2G47810) UniProtKB/Swiss-Prot;Acc:O82248]
Coordinates
chr9:-:66569760..66570176
Molecular Weight (calculated)
15748.5 Da
IEP (calculated)
5.311
GRAVY (calculated)
-0.782
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDTNNILGS FDSSEEGGFK EHDKFLPIAN VGRIMKHILP QNAKISKEGK ETMQECVSEF ISFVTSEASE KCHKEKRKTL NGDDICWAMG NLGFDDYVEP
101: LNRYLHRYRE LEGEKANQNK VDIGNKNEES LLGRFYGP
101: LNRYLHRYRE LEGEKANQNK VDIGNKNEES LLGRFYGP
001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
Arabidopsis Description
NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.