Factsheet for Solyc05g024010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g111450.1.1
Solyc03g111460.1.1
Solyc03g111470.1.1
Solyc06g063280.1.1
Solyc06g072040.1.1
Solyc06g073150.2.1
Solyc09g074760.1.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	Solyc09g074760.1.1	AT2G47810.1	17138697
AT1G28050.1	Solyc06g063280.1.1	AT3G21150.1	21798944
AT1G28050.1	Solyc06g072040.1.1	AT3G48590.1	17138697
AT1G28050.1	Solyc03g111450.1.1	AT5G50470.1	17138697
AT1G28050.1	Solyc03g111460.1.1	AT5G50470.1	17138697
AT1G28050.1	Solyc03g111470.1.1	AT5G50470.1	17138697
AT1G28050.1	Solyc03g111450.1.1	AT5G50480.1	17138697
AT1G28050.1	Solyc03g111460.1.1	AT5G50480.1	17138697
AT1G28050.1	Solyc03g111470.1.1	AT5G50480.1	17138697
AT1G28050.1	Solyc03g111450.1.1	AT5G50490.1	17138697
AT1G28050.1	Solyc03g111460.1.1	AT5G50490.1	17138697
AT1G28050.1	Solyc03g111470.1.1	AT5G50490.1	17138697
AT2G33500.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT2G33500.1	Solyc11g017300.1.1	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065377	Potato	nucleus	94.69	94.48
CDY15696	Canola	nucleus	34.29	53.63
Bra030070.1-P	Field mustard	nucleus	35.18	51.62
CDY11755	Canola	nucleus	43.58	50.13
CDY30385	Canola	nucleus	41.59	48.58
CDY68819	Canola	nucleus	41.59	48.58
Bra010908.1-P	Field mustard	nucleus	44.25	47.85
CDX90119	Canola	nucleus	43.81	47.26
CDY66639	Canola	nucleus	42.04	47.15
Bra041077.1-P	Field mustard	nucleus	42.26	46.81
AT2G33500.1	Thale cress	nucleus	40.04	45.02
AT1G28050.1	Thale cress	nucleus	42.92	44.8
VIT_14s0068g01380.t01	Wine grape	nucleus	44.47	44.77
CDY48428	Canola	nucleus	24.56	41.11
KRG94656	Soybean	nucleus	32.96	38.7
KRH06865	Soybean	nucleus	32.52	38.58
GSMUA_Achr10P...	Banana	nucleus	35.62	35.15
EES14176	Sorghum	nucleus	35.18	32.45
GSMUA_Achr6P06130_001	Banana	nucleus	31.42	31.91
GSMUA_Achr11P...	Banana	nucleus	35.84	31.27
Solyc09g074560.2.1	Tomato	nucleus	25.66	31.1
TraesCS7B01G161500.1	Wheat	nucleus	32.74	30.33
Zm00001d031662_P001	Maize	nucleus	32.74	30.27
TraesCS7D01G264300.1	Wheat	nucleus	32.74	30.27
Os09t0509700-01	Rice	nucleus	28.54	29.93
TraesCS7A01G263500.1	Wheat	nucleus	32.3	29.8
Solyc02g089500.2.1	Tomato	nucleus	8.85	28.17
Solyc05g020020.2.1	Tomato	nucleus	22.79	25.12
HORVU0Hr1G021050.5	Barley	cytosol	22.79	24.35
Solyc07g045180.2.1	Tomato	nucleus	21.46	23.21
Solyc05g046040.1.1	Tomato	nucleus	20.8	22.43
Solyc12g096500.1.1	Tomato	nucleus	17.7	22.35
Solyc08g006530.2.1	Tomato	nucleus	17.04	22.06
Solyc12g006240.1.1	Tomato	nucleus	12.83	21.56
Solyc02g089540.2.1	Tomato	nucleus	17.04	19.69
Solyc07g006630.2.1	Tomato	nucleus	16.37	19.17
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.91	18.95
Solyc02g089520.1.1	Tomato	nucleus	16.81	18.58

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315
InterPro:IPR010402	UniProt:K4BZN9	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336	EnsemblPlantsGene:Solyc05g024010.2	EnsemblPlants:Solyc05g024010.2.1	UniParc:UPI00027658F0
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:30237066..30240376

Molecular Weight (calculated)

49705.5 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.604

Length

452 amino acids

Sequence
(BLAST)

001: MSPGESRPCD FCNQQIAVLY CRADTAKLCL FCDQLVHSAN ALSKKHLRSQ ICDNCGSEPV SIRCDTDKLV LCQECDWDAH GSCAVSGAHD RSPVEGFSGC
101: PSASDLASAW GLDIESKKLH QQHTVLEYPS WMSKDAPPSS VLLQDLMVPS AINSAIYSTK QTPTCGKQKQ VIFKQLIELF KRDLADGVGA GAEDLVPKTP
201: NATSDWQGNI NVSIMDGVTQ KPQQQQPQNV PFTSSIMPHN PKDSDQMVER NILWRGNSFD QNTQIWDFNL GQLRSHEQSS SLEADYSESD MACMMKSYGE
301: LIKGTSLATS KVLGLSGINC SVVHDDMTAF SNNSNNRAAS QGPATSESNN LPRIKTSSDL GCVKPKCGGV STDLNFMDQS IVVGGDNTGE ETLKADMELL
401: AKNRGNAMQR YKEKKKTRRY DKHIRYESRK ARADTRKRVK GRFVKANESP DG

Best Arabidopsis Sequence Match ( AT2G33500.2 )
(BLAST)

001: MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQE DSVHSTSTKG
301: QETSKSNNIP AAIHSHKSSN DSCGLHCTEH IAITSNRATR LVAVTNADLE QMAQNRDNAM QRYKEKKKTR RYDKTIRYET RKARAETRLR VKGRFVKATD
401: P

Arabidopsis Description

COL14Zinc finger protein CONSTANS-LIKE 14 [Source:UniProtKB/Swiss-Prot;Acc:O22800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.