Factsheet for Solyc02g089540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026065	Potato	nucleus	96.16	91.04
Solyc02g089520.1.1	Tomato	nucleus	85.93	82.15
Solyc02g089500.2.1	Tomato	nucleus	26.34	72.54
VIT_14s0083g00640.t01	Wine grape	nucleus	70.59	70.59
GSMUA_Achr3P28130_001	Banana	nucleus	37.85	52.86
GSMUA_Achr4P18680_001	Banana	nucleus	11.25	50.0
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	36.32	48.8
Solyc12g096500.1.1	Tomato	nucleus	41.69	45.53
Solyc08g006530.2.1	Tomato	nucleus	40.41	45.27
Solyc07g006630.2.1	Tomato	nucleus	40.15	40.67
HORVU0Hr1G022380.1	Barley	cytosol	17.39	23.94
Solyc05g020020.2.1	Tomato	nucleus	21.74	20.73
Solyc07g045180.2.1	Tomato	nucleus	21.99	20.57
Solyc09g074560.2.1	Tomato	nucleus	19.44	20.38
Solyc05g046040.1.1	Tomato	nucleus	20.46	19.09
Solyc05g024010.2.1	Tomato	nucleus	19.69	17.04
Solyc12g006240.1.1	Tomato	nucleus	11.0	15.99
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	16.88	13.89

Protein Annotations

MapMan:15.5.1.2	ProteinID:AAS67376.1	EMBL:AY490251	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009416	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0046872	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	UniProt:Q2VY10
SMART:SM00336	EnsemblPlantsGene:Solyc02g089540.2	EnsemblPlants:Solyc02g089540.2.1	UniParc:UPI0000662550	InterPro:Znf_B-box	SEG:seg

Description

CONSTANS 1 [Source:UniProtKB/TrEMBL;Acc:Q2VY10]

Coordinates

chr2:-:51322971..51325673

Molecular Weight (calculated)

43438.6 Da

IEP (calculated)

5.756

GRAVY (calculated)

-0.625

Length

391 amino acids

Sequence
(BLAST)

001: MLKKENSNNW ARVCDSCHSA TCTVYCRADS AYLCAGCDAR IHTASLMASR HERVWVCEAC ERAPAAFLCK ADAASLCASC DADIHSANPL ARRHHRVPIM
101: PIPGTIYGPP AVHTITGGSM MIGGTTGEGT EDDGFLSLNQ DADDTTIDEE DEDEAASWLL LNPPVKNNNK NNNYGMLFGG EVVDDYLDLA EYGGDSQFND
201: QYSVNQQQQH YSVPQKSYVE DSVVPVQNGQ RKSLILYQTP QQQQSHHLNF QLGMEYDNSN TGYGYPASLS HSVSISSMDV SVVPESAQSE TSNSHPRPPK
301: GTIDLFSGPP IQIPPQLTPM DREARVLRYR EKKKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTDVEAE VDQMFSTQLM TDSNYGIVPS F

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.