Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 67.5 | 64.95 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 16.79 | 53.41 |
| CDY69474 | Canola | nucleus, plastid | 17.5 | 51.04 |
| Bra001043.1-P | Field mustard | nucleus | 33.57 | 41.23 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 54.64 | 39.13 |
| KRH01455 | Soybean | nucleus | 48.57 | 38.64 |
| KRH45169 | Soybean | nucleus | 47.86 | 38.51 |
| AT3G02380.1 | Thale cress | nucleus | 47.14 | 38.04 |
| Solyc02g089540.2.1 | Tomato | nucleus | 52.86 | 37.85 |
| GSMUA_Achr2P04960_001 | Banana | nucleus | 36.07 | 37.55 |
| Bra021464.1-P | Field mustard | nucleus | 42.14 | 36.76 |
| KRH18308 | Soybean | nucleus | 47.14 | 36.57 |
| GSMUA_Achr7P16370_001 | Banana | nucleus | 37.86 | 36.3 |
| PGSC0003DMT400026065 | Potato | nucleus | 53.21 | 36.08 |
| KRG93763 | Soybean | nucleus | 47.14 | 36.07 |
| PGSC0003DMT400026068 | Potato | nucleus | 52.14 | 36.05 |
| Solyc02g089520.1.1 | Tomato | nucleus | 51.43 | 35.21 |
| GSMUA_Achr10P... | Banana | nucleus | 39.64 | 34.8 |
| GSMUA_Achr9P19630_001 | Banana | nucleus | 40.0 | 33.63 |
| GSMUA_Achr1P23420_001 | Banana | nucleus | 40.0 | 33.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.86 | 33.23 |
| AT5G15850.1 | Thale cress | nucleus | 41.79 | 32.96 |
| AT5G15840.1 | Thale cress | nucleus | 43.21 | 32.44 |
| Bra023541.1-P | Field mustard | nucleus | 34.29 | 30.48 |
| Bra008668.1-P | Field mustard | nucleus | 36.43 | 30.27 |
| Bra008669.1-P | Field mustard | nucleus | 39.29 | 30.05 |
| GSMUA_Achr11P... | Banana | nucleus | 37.14 | 29.89 |
| Solyc02g089500.2.1 | Tomato | nucleus | 15.0 | 29.58 |
| GSMUA_Achr10P... | Banana | nucleus | 21.07 | 14.71 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 20.36 | 14.58 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 21.79 | 14.52 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 21.07 | 14.32 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 21.07 | 14.15 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 20.71 | 13.74 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 13.21 | 13.03 |
| GSMUA_Achr10P... | Banana | nucleus | 20.36 | 12.45 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 3.93 | 12.36 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 17.86 | 12.25 |
| GSMUA_Achr6P06130_001 | Banana | nucleus | 18.93 | 11.91 |
| GSMUA_Achr11P... | Banana | nucleus | 17.86 | 9.65 |
Protein Annotations
| MapMan:35.1 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSMUA_Achr3G28130_001 | EnsemblPlants:GSMUA_Achr3P28130_001 |
| EnsemblPlants:GSMUA_Achr3T28130_001 | InterPro:IPR000315 | InterPro:IPR010402 | UniProt:M0SIH9 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | SMART:SM00336 | UniParc:UPI000295A124 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
Putative Zinc finger protein CONSTANS-LIKE 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28130_001]
Coordinates
chr3:-:27514011..27515442
Molecular Weight (calculated)
31022.4 Da
IEP (calculated)
7.126
GRAVY (calculated)
-0.484
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKVEESSGW AAPRTCESCR SAPCTVYCRA DAAALCAACD ASIHSANLLA RRHHRVPLLP DLAGGGLVVR PGLSAAYHGA GGLSFAEEAD EFLDLVEYDS
101: SENECGSDQQ QLLQEAQQFS HGKSEERDHL VPNEQHQHSL QMEFDASNGF NYSSSLSHRI LSIRNNHVSL SSMDASVVPD TSIGAPKGTM DLFSGHHPLQ
201: VQPQLNLMDR EARVLRYREK RKTRRFEKTI RYASRKAYAE TRPRIKGRFA KKSDVELEVD QMFSTAAVLA NSRFGVVPSF
101: SENECGSDQQ QLLQEAQQFS HGKSEERDHL VPNEQHQHSL QMEFDASNGF NYSSSLSHRI LSIRNNHVSL SSMDASVVPD TSIGAPKGTM DLFSGHHPLQ
201: VQPQLNLMDR EARVLRYREK RKTRRFEKTI RYASRKAYAE TRPRIKGRFA KKSDVELEVD QMFSTAAVLA NSRFGVVPSF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.