Factsheet for GSMUA_Achr5P14740_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr1P01610_001
GSMUA_Achr1P03730_001
GSMUA_Achr2P06030_001
GSMUA_Achr2P11860_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P17520_001
GSMUA_Achr2P18250_001
GSMUA_Achr3P09860_001
GSMUA_Achr3P22500_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001
GSMUA_Achr4P28510_001
GSMUA_Achr4P30100_001
GSMUA_Achr5P10290_001
GSMUA_Achr5P10300_001
GSMUA_Achr5P13770_001
GSMUA_Achr5P26130_001
GSMUA_Achr6P06410_001
GSMUA_Achr6P08880_001
GSMUA_Achr6P19560_001
GSMUA_Achr6P20920_001
GSMUA_Achr7P03170_001
GSMUA_Achr7P16760_001
GSMUA_Achr7P22470_001
GSMUA_Achr7P26720_001
GSMUA_Achr8P02810_001
GSMUA_Achr8P07910_001
GSMUA_Achr8P14860_001
GSMUA_Achr8P21300_001
GSMUA_Achr8P28400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	GSMUA_Achr3P22500_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr5P26130_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr6P19560_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr7P03170_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr8P07910_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr1P03730_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr2P11860_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr5P10290_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr5P10300_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr5P13770_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT5G65683.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT5G65683.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944
AT5G65683.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr2P06030_001	AT3G24140.1	21798944
AT5G65683.1	GSMUA_Achr8P28400_001	AT3G24140.1	21798944
AT5G65683.1	GSMUA_Achr6P06410_001	AT3G48550.1	21798944
AT5G65683.1	GSMUA_Achr6P20920_001	AT3G48550.1	21798944
AT5G65683.1	GSMUA_Achr6P08880_001	AT3G54170.1	21798944
AT5G65683.1	GSMUA_Achr3P09860_001	AT3G56270.1	21798944
AT5G65683.1	GSMUA_Achr8P02810_001	AT3G56270.1	21798944
AT5G65683.1	GSMUA_Achr8P21300_001	AT3G56270.1	21798944
AT5G65683.1	GSMUA_Achr7P26720_001	AT4G17220.1	21798944
AT5G65683.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr7P22470_001	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	69.36	65.57
GSMUA_Achr4P22090_001	Banana	nucleus	63.58	61.54
GSMUA_Achr7P01890_001	Banana	mitochondrion	62.43	60.5
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	49.28	49.49
VIT_07s0205g00030.t01	Wine grape	nucleus	46.53	49.09
Zm00001d024940_P001	Maize	peroxisome	50.43	47.35
Zm00001d004553_P001	Maize	peroxisome	51.01	47.07
TraesCS2A01G045100.1	Wheat	peroxisome	50.58	46.05
TraesCS2D01G043700.1	Wheat	peroxisome	50.72	46.0
TraesCS2B01G057300.1	Wheat	peroxisome	50.58	45.45
OQU81040	Sorghum	peroxisome	44.94	43.5
VIT_18s0001g08100.t01	Wine grape	plastid	47.11	43.06
PGSC0003DMT400078676	Potato	plastid	43.35	42.19
Solyc02g091710.2.1	Tomato	plastid	43.64	42.06
KRH74431	Soybean	mitochondrion	40.75	41.47
Solyc04g076860.2.1	Tomato	nucleus	44.94	41.47
KRH39527	Soybean	extracellular, golgi	32.23	41.22
CDY28148	Canola	plastid	40.03	40.8
PGSC0003DMT400016355	Potato	nucleus	44.36	40.72
KRH45468	Soybean	cytosol, peroxisome	23.55	40.45
AT5G49665.1	Thale cress	plastid	42.49	39.73
KRH16916	Soybean	nucleus	38.58	39.61
KRH72527	Soybean	nucleus	37.14	39.48
Bra040498.1-P	Field mustard	plastid	40.61	38.6
CDY25618	Canola	nucleus, peroxisome, plastid	36.85	38.52
Bra030218.1-P	Field mustard	nucleus	36.99	38.1
CDY45010	Canola	mitochondrion, peroxisome	39.88	37.91
CDX89500	Canola	cytosol, peroxisome, plastid	36.56	37.59
KRH75634	Soybean	nucleus	35.12	37.5
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	36.71	37.19
Bra017859.1-P	Field mustard	plastid	33.96	37.18
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	36.13	36.5
CDY31616	Canola	nucleus	36.13	36.39
Bra031849.1-P	Field mustard	plastid	36.27	35.45
CDY08765	Canola	plastid	36.13	35.31
AT4G37890.1	Thale cress	nucleus	37.57	35.18
Bra024408.1-P	Field mustard	plastid	35.98	35.17
CDY52535	Canola	plastid	35.98	35.07
CDY45614	Canola	plastid	35.4	34.41
AT5G65683.1	Thale cress	peroxisome, plastid	35.12	33.89
CDY37838	Canola	plastid	21.97	30.4
KRH45469	Soybean	nucleus	7.51	29.38
GSMUA_Achr5P20480_001	Banana	mitochondrion	23.7	25.87
GSMUA_Achr11P...	Banana	mitochondrion	21.53	23.84
GSMUA_Achr11P...	Banana	mitochondrion	18.35	23.61
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	21.82	23.59
GSMUA_Achr9P22360_001	Banana	plastid	13.15	22.47
GSMUA_Achr6P36520_001	Banana	plastid	22.11	21.89
GSMUA_Achr4P06340_001	Banana	mitochondrion	5.78	20.83
GSMUA_Achr2P11780_001	Banana	golgi	13.73	20.13

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	ncoils:Coil	EnsemblPlantsGene:GSMUA_Achr5G14740_001	EnsemblPlants:GSMUA_Achr5P14740_001
EnsemblPlants:GSMUA_Achr5T14740_001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0SYK3
PFAM:PF13519	PFAM:PF13639	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000294EE7B	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G14740_001]

Coordinates

chr5:+:10672864..10675770

Molecular Weight (calculated)

74993.1 Da

IEP (calculated)

10.244

GRAVY (calculated)

-0.337

Length

692 amino acids

Sequence
(BLAST)

001: MGGWRRAFCT SATVVARTEA GEKKQQKQIM GSSSPRSCAK LSFFSGGGGR GGNSPSTPRL ALCRTSSESP DSSKLQCDKL PSPATASVNT SRKNRSPALF
101: RRKALSTPSS PRSPSGFALF KQLSRSRCRI CTQSLRASRE MPVFTAECSH AFHLSCIAAH VRSMHGSLAC PVCFATLRRA QLPSAFHHQQ EDAVVEQVYD
201: DDEPLLIVST TNKGGGMRFN PIPEAANEDE DELPRRPTTR SRAGGVQVSM MPQAALLSEG RRHRNYVVML KVKAPRMRPA NLLSPAGGRT PIDLVTVLDV
301: GQGMTADKLQ MLKSKMRLVV SSMGPADRLS VVAFSAVAGA KRLLPLRRMS RQGQRAARQI VERLVVVGGG APSGEEIVAD ALKKATKVLE DRRERNPVAT
401: IMLLSDARQQ HYAHLAIPLH APGFGDGAAG PSPQKQKEES SEDSFMKCLG GLASLVMRDV RLQLFLPSGK ISAVYPCGGG GGGGGGCREE APGEGSFVLH
501: LGNLYAEEER ELLVELRVPV SSSAASAPEN SHHQLSVKCN YRDPAIQDVI LDAEQILLLP PLLHSQAASS SSCSATSQWL RNLFVSTRAL AESRRLADLS
601: DYATAHHLLS SARSLLRQSA CDAQDHGLIQ NLEAELADLE RRRLLRKQHQ LPREQLTSTS AWRAAEQLAK VAMMRKSLNR VGDLHGFENA RF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.