Factsheet for GSMUA_Achr5P13770_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P03730_001
GSMUA_Achr2P11860_001
GSMUA_Achr5P10290_001
GSMUA_Achr5P10300_001
GSMUA_Achr5P13770_001
GSMUA_Achr6P21940_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	GSMUA_Achr1P03730_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr2P11860_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr5P10290_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr5P10300_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr5P13770_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr1P03730_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr2P11860_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr5P10290_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr5P10300_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr5P13770_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr1P03730_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr2P11860_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr5P10290_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr5P10300_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr5P13770_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr6P21940_001	AT5G15170.1	21798944
AT1G01510.1	GSMUA_AchrUn_...	AT5G15170.1	21798944
AT1G01510.1	GSMUA_AchrUn_...	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0088g00460.t01	Wine grape	cytosol	11.65	75.95
GSMUA_Achr5P10290_001	Banana	nucleus	45.44	67.05
TraesCS4B01G319000.1	Wheat	mitochondrion	67.96	66.79
Os03t0126100-01	Rice	cytosol	55.92	65.6
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	67.57	54.46
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	67.77	54.28
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	67.18	54.15
HORVU1Hr1G049460.1	Barley	cytosol	67.57	53.87
TraesCS1A01G185300.2	Wheat	cytosol	67.18	53.64
TraesCS1D01G191600.1	Wheat	cytosol	67.18	53.56
TraesCS1B01G193200.1	Wheat	cytosol	66.8	53.33
Zm00001d029719_P002	Maize	cytosol	66.02	53.21
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	66.02	52.8
Os10t0533000-01	Rice	extracellular	66.6	52.77
KRH00851	Soybean	endoplasmic reticulum	61.16	51.05
KRH40381	Soybean	endoplasmic reticulum	60.58	50.57
PGSC0003DMT400000547	Potato	cytosol	61.55	50.24
Solyc01g095040.2.1	Tomato	nucleus	60.97	49.76
AT1G01510.1	Thale cress	cytosol	60.97	49.37
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	60.19	49.13
OQU92250	Sorghum	mitochondrion	66.21	47.56
CDX90038	Canola	mitochondrion, plastid	59.61	47.23
HORVU4Hr1G083270.5	Barley	mitochondrion	55.73	46.52
GSMUA_Achr5P10300_001	Banana	cytosol	31.65	46.31
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	44.66	41.97
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	15.53	33.61
CDY15172	Canola	plastid	59.42	32.11

Protein Annotations

EnsemblPlants:GSMUA_Achr5P13770_001	EnsemblPlants:GSMUA_Achr5T13770_001	EnsemblPlantsGene:GSMUA_Achr5G13770_001	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	InterPro:D-isomer_DH_NAD-bd
InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43254	PFAM:PF02826	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002963DB8
UniProt:M0SYA6	MapMan:35.1	:	:	:	:

Description

erythronate-4-phosphate dehydrogenase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G13770_001]

Coordinates

chr5:+:9899784..9905079

Molecular Weight (calculated)

56460.9 Da

IEP (calculated)

6.784

GRAVY (calculated)

-0.329

Length

515 amino acids

Sequence
(BLAST)

001: MALFLSLLRR THLLSRDSSS SASAGWFGSI QPLCRGMRRC RGLVLGIIGR SASARCLATR SLAFKMSVLY FDLHHEGKEK SGRPVIAFPP AARRMDTLND
101: LLALSDLVSL HCSLSDATLH ILNSERLQHI KPGAFIVNSG STQLIDDCAL KQLLIDGTIA GCALDGAEGP QWMEAWVREM PNVLILPRSA DYSEEVWMEI
201: REKAITILQS FFLDGIVPDY AVSDEDETIN ESAYEDEQAK KQVKEPQQVQ DVDQLTGESH LTSGYMNQKV SHHLKESQVS GESKNTGSRT EGRHSGSGKK
301: GKKRPARRRS QQNSDDSSAA DSASGYTSGQ DDDTAISGRD KILSSNSRFA SSEDPRNKQM CIFEQISDLS SGKQVAVSTD DGELLKNGFV VALRAIDRPG
401: YHVSRQRIPG GGWFLDTVSN VSKRDPAAQF LVSFKSKDTL GLQSFAAGGK LLQINRKMEF VFANHSFDVC GSWTLQGSVL EQCKLVNCKN PLAVLEVSIE
501: ILAAVAEDGI SRWLD

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.