Factsheet for GSMUA_AchrUn_randomP23160_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 4
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	15.79	72.63
AT5G15170.1	Thale cress	nucleus	65.68	47.44
Bra006287.1-P	Field mustard	nucleus	66.13	47.22
VIT_10s0116g00450.t01	Wine grape	plastid	72.31	46.61
KRH61715	Soybean	nucleus	67.73	45.75
TraesCS2B01G244300.1	Wheat	plastid	69.79	45.66
Solyc03g031820.2.1	Tomato	nucleus	67.28	45.58
HORVU2Hr1G045220.3	Barley	plastid	69.34	45.29
TraesCS2D01G224500.1	Wheat	plastid	69.11	45.14
TraesCS2A01G218900.1	Wheat	plastid	68.88	44.99
Os07t0530100-01	Rice	plastid	68.42	44.56
Zm00001d021669_P008	Maize	plastid	67.73	44.51
KXG36373	Sorghum	plastid	67.73	44.31
CDY43825	Canola	mitochondrion	8.92	43.33
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	65.9	42.48
PGSC0003DMT400061871	Potato	nucleus	45.54	38.94
CDX70598	Canola	nucleus	65.9	37.75
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	3.2	8.7
GSMUA_AchrUn_...	Banana	cytosol, nucleus	1.37	5.66

Protein Annotations

MapMan:14.10.2	Gene3D:3.30.870.10	Gene3D:3.30.870.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0017005	EnsemblPlantsGene:GSMUA_AchrUn_randomG23160_001	EnsemblPlants:GSMUA_AchrUn_randomP23160_001	EnsemblPlants:GSMUA_AchrUn_randomT23160_001	InterPro:IPR027415	UniProt:M0UBM4
PFAM:PF06087	PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	SUPFAM:SSF56024	InterPro:TDP_C	InterPro:Tdp1
UniParc:UPI000295A813	SEG:seg	:	:	:	:

Description

Putative Tyrosyl-DNA phosphodiesterase 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23160_001]

Coordinates

chrchrUn_random:-:113319956..113329236

Molecular Weight (calculated)

49607.5 Da

IEP (calculated)

9.505

GRAVY (calculated)

-0.317

Length

437 amino acids

Sequence
(BLAST)

001: MPSLLYKKYK FSLFVACPSL RKVPHVLVVH GESGATEDHL KKVKPANWVL HKPPLPIAYG THHSKFMLLV YHSGVRVVVH TANLIYVDWN NKTQGLWMQD
101: FPWKDNNSCK DSFFENDLVD YLKMLKLPEF TAKLPAVGNV SINASFFRKF DYSSAMVRLI ASVPGYHTGA NLNKWGHMKL RSVLGNCIFD KEFCKSPLIY
201: QFSSLGSLDE KWLSELTVSM SSGVSSDKSP LGIGKPHIIW PTVEDVRCSI EGYAAGNAIP SPQKNVEKDF LKKYWTKWKA NHVGRCRAMP HIKTYTRYNG
301: QNLAWFLLTS ANLSKAAWGA LQKNNSQLMI RSYELGVLFL PAYVKDLGSW FSCAGNDGTE QIAHENSSSS SKPWSLATLC LNDDASEVIQ LPVPYQLPPQ
401: PYTSEDVPWS WDRRYTKKDV YGQVWPRHVQ LYAKQDT

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.