Factsheet for HORVU2Hr1G045160.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	72.63	15.79
TraesCS2B01G244300.1	Wheat	plastid	91.58	13.02
TraesCS2D01G224500.1	Wheat	plastid	91.58	13.0
HORVU2Hr1G045220.3	Barley	plastid	91.58	13.0
PGSC0003DMT400061871	Potato	nucleus	69.47	12.92
KXG36373	Sorghum	plastid	90.53	12.87
TraesCS2A01G218900.1	Wheat	plastid	90.53	12.86
Zm00001d021669_P008	Maize	plastid	89.47	12.78
Os07t0530100-01	Rice	plastid	86.32	12.22
AT5G15170.1	Thale cress	nucleus	67.37	10.58
Solyc03g031820.2.1	Tomato	nucleus	71.58	10.54
Bra006287.1-P	Field mustard	nucleus	67.37	10.46
KRH61715	Soybean	nucleus	67.37	9.89
VIT_10s0116g00450.t01	Wine grape	plastid	69.47	9.73
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	67.37	9.44
CDX70598	Canola	nucleus	67.37	8.39
CDY43825	Canola	mitochondrion	0.0	0.0

Protein Annotations

MapMan:14.10.2	Gene3D:3.30.870.20	UniProt:A0A287HVA9	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
EnsemblPlantsGene:HORVU2Hr1G045160	EnsemblPlants:HORVU2Hr1G045160.1	InterPro:IPR027415	PFAM:PF06087	PANTHER:PTHR12415	PANTHER:PTHR12415:SF0
SUPFAM:SSF56024	InterPro:TDP_C	InterPro:Tdp1	UniParc:UPI000B47697F	:	:

Description

No Description!

Coordinates

chrchr2H:-:236482466..236483068

Molecular Weight (calculated)

10525.4 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.373

Length

95 amino acids

Sequence
(BLAST)

1: QFSSLGSLDE KWMSEFACSL SAGKADDGSQ LGIGKPLIVW PTVEDVRCSI EGYAAGSCIP SPQKNVEKDF LRKYWSRWKA DHVGRWYAPP FPAAT

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.