Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG36373 | Sorghum | plastid | 93.68 | 93.26 |
| HORVU2Hr1G045160.1 | Barley | cytosol, nucleus | 12.78 | 89.47 |
| HORVU2Hr1G045220.3 | Barley | plastid | 81.95 | 81.46 |
| TraesCS2A01G218900.1 | Wheat | plastid | 81.65 | 81.17 |
| TraesCS2B01G244300.1 | Wheat | plastid | 81.5 | 81.14 |
| TraesCS2D01G224500.1 | Wheat | plastid | 81.2 | 80.72 |
| Os07t0530100-01 | Rice | plastid | 80.45 | 79.73 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion | 44.51 | 67.73 |
| AT5G15170.1 | Thale cress | nucleus | 54.89 | 60.33 |
| Bra006287.1-P | Field mustard | nucleus | 55.49 | 60.29 |
| VIT_10s0116g00450.t01 | Wine grape | plastid | 60.15 | 59.0 |
| Solyc03g031820.2.1 | Tomato | nucleus | 56.54 | 58.29 |
| KRH61715 | Soybean | nucleus | 55.64 | 57.19 |
| PGSC0003DMT400061871 | Potato | nucleus | 42.86 | 55.77 |
| CDX78616 | Canola | endoplasmic reticulum, golgi, vacuole | 55.19 | 54.13 |
| CDX70598 | Canola | nucleus | 54.59 | 47.58 |
| CDY43825 | Canola | mitochondrion | 5.86 | 43.33 |
| Zm00001d021668_P002 | Maize | cytoskeleton, cytosol, peroxisome | 3.01 | 17.39 |
Protein Annotations
| EntrezGene:100383136 | MapMan:14.10.2 | Gene3D:2.60.200.20 | Gene3D:3.30.870.10 | Gene3D:3.30.870.20 | EMBL:BT066335 |
| UniProt:C0PDG6 | InterPro:FHA_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | InterPro:IPR000253 | InterPro:IPR027415 | ProteinID:ONM57961.1 | ProteinID:ONM57967.1 | PFAM:PF06087 |
| PANTHER:PTHR12415 | PANTHER:PTHR12415:SF0 | InterPro:SMAD_FHA_dom_sf | SUPFAM:SSF49879 | SUPFAM:SSF56024 | InterPro:TDP_C |
| InterPro:Tdp1 | UniParc:UPI000195C994 | EnsemblPlantsGene:Zm00001d021669 | EnsemblPlants:Zm00001d021669_P008 | EnsemblPlants:Zm00001d021669_T008 | SEG:seg |
Description
Tyrosyl-DNA phosphodiesterase 1
Coordinates
chr7:-:159577943..159605581
Molecular Weight (calculated)
74497.8 Da
IEP (calculated)
9.563
GRAVY (calculated)
-0.283
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MASASRVRLG TLVPLTKDNA GSSNGSVSSI PIFQGPNVVG RDHLVVVDKR ISRKHLSLHA STDGSIEVVV EGPNPIIVRS KGQRRKVCAK ETAKIAHGDV
101: LELIPGDYFV KYVDMGDEHV PMHLSDLMKG KRYSEEHGAA VKRIRQIMED EALAKTLQES FAADDAAVSG MPSGQKISSH DSAGSSERNN DRTHSVGPLK
201: DMLPLTFRLM HVQGLPSWTN TSSVTIQDVI QGEVLLAVLS NYMVDIDWLL TACPSLRKVP HVLVLHGQDG ASLELMKKLK PANWILHRPP LPISFGTHHS
301: KAMLLVYPQG IRIVVHTANL IHVDWNYKSQ GLWMQDFPWK DTVDMNKKTA FENDLVDYLS ALKWPEFRVN LPGVGDVNIN AAFFRKFDYS NSMVRLIGSV
401: PGYHVGSNIR KWGHMKLRNV LDEIMFNKQF CKSPLIYQFS SLGSLDEKWM SEFACSLSAG KSDDGSQLGI GKPLIVWPTV EDVRCSIEGY AAGSCIPSPQ
501: KNVERDFLKK YWSRWKADHV GRCRAMPHIK TFTRYSGQNI AWFLLTSANL SKAAWGALQK NNTQLMIRSY ELGVLFLPQT LQSVPQFSCT EKSRSIRDGV
601: ALGKTIKTKL VTLCWKGDEE DPSIVRLPVP YQLPPQPYGT QDVPWSWDRR YTKKDVYGSV WPRYG
101: LELIPGDYFV KYVDMGDEHV PMHLSDLMKG KRYSEEHGAA VKRIRQIMED EALAKTLQES FAADDAAVSG MPSGQKISSH DSAGSSERNN DRTHSVGPLK
201: DMLPLTFRLM HVQGLPSWTN TSSVTIQDVI QGEVLLAVLS NYMVDIDWLL TACPSLRKVP HVLVLHGQDG ASLELMKKLK PANWILHRPP LPISFGTHHS
301: KAMLLVYPQG IRIVVHTANL IHVDWNYKSQ GLWMQDFPWK DTVDMNKKTA FENDLVDYLS ALKWPEFRVN LPGVGDVNIN AAFFRKFDYS NSMVRLIGSV
401: PGYHVGSNIR KWGHMKLRNV LDEIMFNKQF CKSPLIYQFS SLGSLDEKWM SEFACSLSAG KSDDGSQLGI GKPLIVWPTV EDVRCSIEGY AAGSCIPSPQ
501: KNVERDFLKK YWSRWKADHV GRCRAMPHIK TFTRYSGQNI AWFLLTSANL SKAAWGALQK NNTQLMIRSY ELGVLFLPQT LQSVPQFSCT EKSRSIRDGV
601: ALGKTIKTKL VTLCWKGDEE DPSIVRLPVP YQLPPQPYGT QDVPWSWDRR YTKKDVYGSV WPRYG
001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
Arabidopsis Description
TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.