Factsheet for Zm00001d021668_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97314	Sorghum	cytosol, peroxisome, plastid	99.13	99.13
Os07t0529800-01	Rice	extracellular	99.13	99.13
Bra006287.1-P	Field mustard	nucleus	21.74	4.08
KRH61715	Soybean	nucleus	22.61	4.02
AT5G15170.1	Thale cress	nucleus	20.87	3.97
PGSC0003DMT400061871	Potato	nucleus	16.52	3.72
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	21.74	3.69
Solyc03g031820.2.1	Tomato	nucleus	20.0	3.57
CDX70598	Canola	nucleus	22.61	3.41
VIT_10s0116g00450.t01	Wine grape	plastid	20.0	3.39
CDY43825	Canola	mitochondrion	2.61	3.33
Zm00001d021669_P008	Maize	plastid	17.39	3.01
GSMUA_AchrUn_...	Banana	cytosol, nucleus	2.61	2.83

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EntrezGene:541664	EMBL:AF034944	UniProt:B4FFG3	EMBL:BT035851
EMBL:EU955122	EMBL:EU955990	EMBL:EU957882	EMBL:EU958789	EMBL:EU965717	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001950	ProteinID:ONM57950.1	ProteinID:ONM57952.1	ProteinID:ONM57953.1	ProteinID:ONM57954.1
ProteinID:ONM57955.1	ProteinID:ONM57957.1	UniProt:P56330	PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296
PANTHER:PTHR10388	PANTHER:PTHR10388:SF35	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk
TIGRFAMs:TIGR01160	UniParc:UPI00001361F3	EnsemblPlantsGene:Zm00001d021668	EnsemblPlants:Zm00001d021668_P002	EnsemblPlants:Zm00001d021668_T002	SEG:seg

Description

translation initiation factor1Protein translation factor SUI1 homolog

Coordinates

chr7:-:159573273..159576103

Molecular Weight (calculated)

12705.2 Da

IEP (calculated)

9.209

GRAVY (calculated)

-0.434

Length

115 amino acids

Sequence
(BLAST)

001: MSDLDIQIPT AFDPFAEANA GDSGAAAGSK DYVHVRIQQR NGRKSLTTVQ GLKKEFSYSK ILKDLKKEFC CNGTVVQDPE LGQVIQLQGD QRKNVSNFLV
101: QAGIVKKEHI KIHGF

Best Arabidopsis Sequence Match ( AT1G54290.1 )
(BLAST)

001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.