Factsheet for Bra006287.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	98.86	89.23
AT5G15170.1	Thale cress	nucleus	87.91	88.93
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	10.46	67.37
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	47.22	66.13
Solyc03g031820.2.1	Tomato	nucleus	65.36	62.02
KRH61715	Soybean	nucleus	65.2	61.67
PGSC0003DMT400061871	Potato	nucleus	49.35	59.1
VIT_10s0116g00450.t01	Wine grape	plastid	64.87	58.55
TraesCS2B01G244300.1	Wheat	plastid	61.44	56.29
HORVU2Hr1G045220.3	Barley	plastid	61.27	56.05
TraesCS2A01G218900.1	Wheat	plastid	61.27	56.05
TraesCS2D01G224500.1	Wheat	plastid	61.11	55.9
Zm00001d021669_P008	Maize	plastid	60.29	55.49
KXG36373	Sorghum	plastid	60.46	55.39
Os07t0530100-01	Rice	plastid	58.99	53.8
GSMUA_AchrUn_...	Banana	cytosol, nucleus	7.68	44.34
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	8.17	31.06
Os07t0529800-01	Rice	extracellular	4.08	21.74
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	4.08	21.74
EER97314	Sorghum	cytosol, peroxisome, plastid	4.08	21.74

Protein Annotations

MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	EnsemblPlantsGene:Bra006287	EnsemblPlants:Bra006287.1
EnsemblPlants:Bra006287.1-P	InterPro:FHA_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0017005	InterPro:IPR000253	InterPro:IPR027415	UniProt:M4CPZ8	PFAM:PF06087
PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879	SUPFAM:SSF56024	InterPro:TDP_C
InterPro:Tdp1	UniParc:UPI000253FC0C	:	:	:	:

Description

AT5G15170 (E=0.0) | tyrosyl-DNA phosphodiesterase-related

Coordinates

chrA03:-:2879609..2882446

Molecular Weight (calculated)

68840.0 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.426

Length

612 amino acids

Sequence
(BLAST)

001: MASSQVAYLI PLKPDLKEDN SSPRITLSEG PNTIGRLNVS TTDKRLSRKH ITITPSASGS ASLSVEGTNP VVVRSSGERK KVNPRGEVSL ANDDLIELIP
101: GHHFFKLVLP RESERGSYER AAKKARKEGD DVEAIRSFCP DSEKLPSTFR LLSVDGLPDW ANTSCVSIND VVEGDVVAAV LSNYMVDLDW LLSACPKLVN
201: IPQVMVVHGE GDGRQEYIQR KKPANWILHK PRLPISFGTH HSKAIFLVYP RGVRVVVHTA NLIHVDWNNK SQGLWMQDFP WKSDDDNIDT PKVCGFEDDL
301: VDYLAVLKWP EFTACLPGRG NVKINAAFFR KFDYSSATVR LIASVPGYHT GSNMRKWGHM KLRTILQECI FDREFRRSPL VYQFSSLGSL DEKWLAEFGA
401: SLSSGITEDR TPLGHGDPLI IWPTVEDVRC SLEGYAAGNA IPSPLKNVEK PFLKKYWAKW KADHSARSRA MPHIKTFTRY SDQKIAWFLL TSSNLSKAAW
501: GALQKNNSQL MIRSYELGVL FLPSPVKTQA CNFSCTDNNS STKKVKQETK GEVEKRSKLV TMTWQGDRDS PEIISLPVPY QLPPEPYSSE DVPWSWDRGY
601: SKKDVYGQVW PR

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.