CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	45.75	67.73
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	9.89	67.37
AT5G15170.1	Thale cress	nucleus	61.67	65.95
Bra006287.1-P	Field mustard	nucleus	61.67	65.2
Solyc03g031820.2.1	Tomato	nucleus	64.3	64.5
VIT_10s0116g00450.t01	Wine grape	plastid	67.39	64.31
PGSC0003DMT400061871	Potato	nucleus	50.23	63.6
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	61.82	59.0
TraesCS2A01G218900.1	Wheat	plastid	57.96	56.05
TraesCS2D01G224500.1	Wheat	plastid	57.81	55.9
Os07t0530100-01	Rice	plastid	57.96	55.89
KXG36373	Sorghum	plastid	57.65	55.84
Zm00001d021669_P008	Maize	plastid	57.19	55.64
TraesCS2B01G244300.1	Wheat	plastid	57.34	55.54
HORVU2Hr1G045220.3	Barley	plastid	57.19	55.31
CDX70598	Canola	nucleus	61.82	52.42
CDY43825	Canola	mitochondrion	6.8	48.89
GSMUA_AchrUn_...	Banana	cytosol, nucleus	7.42	45.28
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	9.12	36.65
Os07t0529800-01	Rice	extracellular	4.02	22.61
EER97314	Sorghum	cytosol, peroxisome, plastid	4.02	22.61
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	4.02	22.61

Protein Annotations

EntrezGene:100793746	MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	EMBL:ACUP02002183
InterPro:FHA_dom	EnsemblPlantsGene:GLYMA_04G064300	GO:GO:0000012	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006302	GO:GO:0006950	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0017005	UniProt:I1JUA1	InterPro:IPR000253	InterPro:IPR027415	EnsemblPlants:KRH61715
ProteinID:KRH61715	ProteinID:KRH61715.1	PFAM:PF00498	PFAM:PF06087	PANTHER:PTHR12415	PANTHER:PTHR12415:SF0
InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879	SUPFAM:SSF56024	InterPro:TDP_C	InterPro:Tdp1	UniParc:UPI00029540E3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:5351566..5357225

Molecular Weight (calculated)

72444.7 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.378

Length

647 amino acids

Sequence
(BLAST)

001: MSLSPQVGYL VPLNRNFKEE ASVPKFAVSD GINVIGRNNI PVPDKRLSRK HLTLTASPNG SASLLVEGTN PIVVNSGNKR RKLNPKEEAT ICNGDIIELI
101: PGHHLFKYQV LGGDGKSSTC RNNEAQSSFK NKASGRSSQD KVETSSQKQG RNADARKSSG EDNSVEAIRN FHVPSDQIPS TFRLLHVQGL PPWANTSCVS
201: IGDVIQGDIK VAILSNYMVD IDWLVPACPA LSKVPHVLVI HGESDGRVDY IKRSKPANWI LHKPSLPISF GTHHSKAMML IYPQGVRVIV HTANLIYVDW
301: NNKSQGLWMQ DFPWKDQNSL SKGSGFENDL VEYLSVLKWP EFSVNLPFLG SVSICPSFFR KFDYSDARVR LIASVPGYHS GSSLKKWGHM KLRSLLQECT
401: FDEEFKKSPL VYQFSSLGSL DEKWMTELAS SMSAGLSEDK TPLGMGEPQI IWPTVEDVRC SLEGYAAGNA VPSPLKNVEK TFLKKYWAKW KADHTGRCRA
501: MPHIKTFARY KNQSLAWFLL TSANLSKAAW GALQKNNTQL MIRSYELGVL FLPSLFKRHE SVFSCTSNVT VSEDKCPARE SSEMKKTKLV TLTGIKKESM
601: HSSSEVIIPL PLPYELPPLP YSSQDIPWSW DRQYNKKDVY GHVWPRM

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.