Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G218900.1 | Wheat | plastid | 97.16 | 97.01 |
| TraesCS2D01G224500.1 | Wheat | plastid | 96.71 | 96.56 |
| HORVU2Hr1G045220.3 | Barley | plastid | 96.71 | 96.56 |
| HORVU2Hr1G045160.1 | Barley | cytosol, nucleus | 13.02 | 91.58 |
| KXG36373 | Sorghum | plastid | 82.34 | 82.34 |
| Zm00001d021669_P008 | Maize | plastid | 81.14 | 81.5 |
| Os07t0530100-01 | Rice | plastid | 81.74 | 81.37 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion | 45.66 | 69.79 |
| AT5G15170.1 | Thale cress | nucleus | 55.84 | 61.65 |
| Bra006287.1-P | Field mustard | nucleus | 56.29 | 61.44 |
| VIT_10s0116g00450.t01 | Wine grape | plastid | 61.23 | 60.32 |
| Solyc03g031820.2.1 | Tomato | nucleus | 57.48 | 59.53 |
| KRH61715 | Soybean | nucleus | 55.54 | 57.34 |
| PGSC0003DMT400061871 | Potato | nucleus | 42.96 | 56.16 |
| CDX78616 | Canola | endoplasmic reticulum, golgi, vacuole | 56.29 | 55.46 |
| CDX70598 | Canola | nucleus | 55.24 | 48.36 |
| CDY43825 | Canola | mitochondrion | 6.29 | 46.67 |
Protein Annotations
| MapMan:14.10.2 | Gene3D:2.60.200.20 | Gene3D:3.30.870.10 | Gene3D:3.30.870.20 | InterPro:FHA_dom | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008081 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017005 | InterPro:IPR000253 |
| InterPro:IPR027415 | PFAM:PF06087 | PANTHER:PTHR12415 | PANTHER:PTHR12415:SF0 | InterPro:SMAD_FHA_dom_sf | SUPFAM:SSF49879 |
| SUPFAM:SSF56024 | InterPro:TDP_C | InterPro:Tdp1 | EnsemblPlantsGene:TraesCS2B01G244300 | EnsemblPlants:TraesCS2B01G244300.1 | TIGR:cd00060 |
| TIGR:cd09122 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:248140497..248150062
Molecular Weight (calculated)
74931.8 Da
IEP (calculated)
9.286
GRAVY (calculated)
-0.378
Length
668 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSRVRVG TLVPFAEGKS GSPNASPPMP SIPILEGSNV VGRSNLVAVD KRVSRKHLSL RALPDGSVEV VVEGPNPIVV RSEGQRRKVC AQQKAKVMHD
101: DVLELIPGEY FMKYVNTSDE RKSSTSVESH DLKKGKRHSE EDSVAAKRNR QVMEDEALAR TLQESFAEES TSVTEVLSSL DSVGSSERNK ERTDSVGPLK
201: DVLPLTFRLM RVQGLPSWTN TSTVTIQDVI QGEVLLAVLS NYMVDMDWLL TACPSLRKVP HVLVLHGEDG ASLEHLKKTK PANWILHKPP LPISFGTHHS
301: KAMLLVYPQG IRVVVHTANL IHVDWNNKSQ GLWTQDFPWK EANDMSTNIG FENDLVDYLR ALKWPEFRVN LPVAGDVNIN AAFFRKFDYS SSTVRLIGSV
401: PGYHVGPNMK KWGHMKLRSV LEECVFEKQF CKSPLIYQFS SLGSLDEKWM SEFACSLSAG KADDGSQLGI GKPLIVWPTV EDVRCSIEGY AAGSCIPSPQ
501: KNVEKDFLRK YWSRWKADHV GRCRAMPHIK TFTRYNGQNI AWFLLTSSNL SKAAWGALQK NNSQLMIRSY ELGVLFLPKT LQSVPQFSCT EKSRSNLDKL
601: ALGKNIKTKL VTLCWKGDEE KDPSAEVVRL PVPYQLPPQL YGPEDVPWSW DRRYTKKDVY GSVWPRHG
101: DVLELIPGEY FMKYVNTSDE RKSSTSVESH DLKKGKRHSE EDSVAAKRNR QVMEDEALAR TLQESFAEES TSVTEVLSSL DSVGSSERNK ERTDSVGPLK
201: DVLPLTFRLM RVQGLPSWTN TSTVTIQDVI QGEVLLAVLS NYMVDMDWLL TACPSLRKVP HVLVLHGEDG ASLEHLKKTK PANWILHKPP LPISFGTHHS
301: KAMLLVYPQG IRVVVHTANL IHVDWNNKSQ GLWTQDFPWK EANDMSTNIG FENDLVDYLR ALKWPEFRVN LPVAGDVNIN AAFFRKFDYS SSTVRLIGSV
401: PGYHVGPNMK KWGHMKLRSV LEECVFEKQF CKSPLIYQFS SLGSLDEKWM SEFACSLSAG KADDGSQLGI GKPLIVWPTV EDVRCSIEGY AAGSCIPSPQ
501: KNVEKDFLRK YWSRWKADHV GRCRAMPHIK TFTRYNGQNI AWFLLTSSNL SKAAWGALQK NNSQLMIRSY ELGVLFLPKT LQSVPQFSCT EKSRSNLDKL
601: ALGKNIKTKL VTLCWKGDEE KDPSAEVVRL PVPYQLPPQL YGPEDVPWSW DRRYTKKDVY GSVWPRHG
001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
Arabidopsis Description
TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.