Factsheet for PGSC0003DMT400061871

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031820.2.1	Tomato	nucleus	93.54	74.11
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	12.92	69.47
GSMUA_AchrUn_...	Banana	cytosol, nucleus	10.96	52.83
KRH61715	Soybean	nucleus	63.6	50.23
AT5G15170.1	Thale cress	nucleus	59.3	50.08
VIT_10s0116g00450.t01	Wine grape	plastid	65.75	49.56
Bra006287.1-P	Field mustard	nucleus	59.1	49.35
CDY43825	Canola	mitochondrion	8.02	45.56
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	38.94	45.54
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	59.3	44.69
KXG36373	Sorghum	plastid	56.36	43.11
TraesCS2B01G244300.1	Wheat	plastid	56.16	42.96
TraesCS2A01G218900.1	Wheat	plastid	56.16	42.9
Zm00001d021669_P008	Maize	plastid	55.77	42.86
HORVU2Hr1G045220.3	Barley	plastid	55.97	42.75
TraesCS2D01G224500.1	Wheat	plastid	55.97	42.75
Os07t0530100-01	Rice	plastid	55.19	42.03
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	12.52	39.75
CDX70598	Canola	nucleus	58.51	39.19
EER97314	Sorghum	cytosol, peroxisome, plastid	3.72	16.52
Os07t0529800-01	Rice	extracellular	3.72	16.52
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	3.72	16.52

Protein Annotations

MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	InterPro:FHA_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0017005	InterPro:IPR000253
InterPro:IPR027415	UniProt:M1C866	PFAM:PF06087	EnsemblPlantsGene:PGSC0003DMG400024073	PGSC:PGSC0003DMG400024073	EnsemblPlants:PGSC0003DMT400061871
PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879	SUPFAM:SSF56024	InterPro:TDP_C
InterPro:Tdp1	UniParc:UPI000295D430	:	:	:	:

Description

Tyrosyl-DNA phosphodiesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400024073]

Coordinates

chr3:-:2708784..2716340

Molecular Weight (calculated)

57400.0 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.388

Length

511 amino acids

Sequence
(BLAST)

001: MSTSSQVGFL VPLSDNLEED GKSSIPKIPL SEGPNCVGRD CIPVTDKRLS RKHLTITATC TGSADVVVEG TNPVVIRSKG ERKKLLSRER WKLGSGDIIE
101: LIPGHYLFKY VSTARKDETS PGNKQKRPFS EENITDKGQM HGKKKAREVC QEEASEMNML HNNGQETNSS AEAIRQFRVP KHKLPLTFRL MRVRELPAWA
201: NSEAVSISDV IQGNVLVAIL SNYMVDMDWL LSACPTLKRI PNVLIIHGEG DGTMEYMKRS KLANWILHKP SLPIAYGTHH SKAMLLVYPT GVRVIVHTAN
301: LISIDWNNKS QGLWMQDFPW KDQNNLGKDG GFENDLVDYL SALKWPEFTV NIPAFGSCKI NSSFFKKFDY SSASVRLIAS VPGYHSGSSL RKWGHMKLRT
401: ILQECTFSKE FQKSPLIYQF SSLGSLDEKW MTEFASSMSA GVTDDKKPLG IGEPMIVWPN VEDVRCSLEG YAAGSAIPSP SKNVEKEFLK KYWARWKASH
501: TGRWYSSLLK F

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.