Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061871 | Potato | nucleus | 39.75 | 12.52 |
| Solyc03g031820.2.1 | Tomato | nucleus | 40.99 | 10.23 |
| VIT_10s0116g00450.t01 | Wine grape | plastid | 42.86 | 10.18 |
| KRH61715 | Soybean | nucleus | 36.65 | 9.12 |
| Bra006287.1-P | Field mustard | nucleus | 31.06 | 8.17 |
| AT5G15170.1 | Thale cress | nucleus | 30.43 | 8.1 |
| CDX78616 | Canola | endoplasmic reticulum, golgi, vacuole | 31.68 | 7.52 |
| CDX70598 | Canola | nucleus | 31.68 | 6.68 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 3.73 | 5.66 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion | 8.7 | 3.2 |
| CDY43825 | Canola | mitochondrion | 1.24 | 2.22 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P21940_001 | EnsemblPlants:GSMUA_Achr6T21940_001 | EnsemblPlantsGene:GSMUA_Achr6G21940_001 | Gene3D:2.60.200.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:FHA_dom | InterPro:IPR000253 | InterPro:SMAD_FHA_dom_sf | SUPFAM:SSF49879 | UniParc:UPI000296102E |
| UniProt:M0T942 | MapMan:35.1 | : | : | : | : |
Description
tyrosyl-DNA phosphodiesterase 1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G21940_001]
Coordinates
chr6:-:18606483..18608903
Molecular Weight (calculated)
17656.1 Da
IEP (calculated)
9.268
GRAVY (calculated)
-0.357
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESRVIIGT LVSCQRNLVA GCLASNVPIF EGANFVGRNN LNVSDKRVSR KHISLQASFD GSAEVVVEGP NPIIFRCGGQ RKKLSSQEKA KLDDGDIIEL
101: IPGRYMFKYV KAGTEHASSS KIDSSVLKIE KRQCDGETSV IKRKRQADEY EFSSSTLQVS S
101: IPGRYMFKYV KAGTEHASSS KIDSSVLKIE KRQCDGETSV IKRKRQADEY EFSSSTLQVS S
001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
Arabidopsis Description
TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.