Factsheet for AT5G15170.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006287.1-P	Field mustard	nucleus	88.93	87.91
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	88.76	79.2
CDX70598	Canola	nucleus	88.26	69.99
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	10.58	67.37
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	47.44	65.68
Solyc03g031820.2.1	Tomato	nucleus	65.79	61.71
KRH61715	Soybean	nucleus	65.95	61.67
VIT_10s0116g00450.t01	Wine grape	plastid	66.94	59.73
PGSC0003DMT400061871	Potato	nucleus	50.08	59.3
TraesCS2B01G244300.1	Wheat	plastid	61.65	55.84
TraesCS2A01G218900.1	Wheat	plastid	60.99	55.16
HORVU2Hr1G045220.3	Barley	plastid	60.99	55.16
Zm00001d021669_P008	Maize	plastid	60.33	54.89
TraesCS2D01G224500.1	Wheat	plastid	60.66	54.86
KXG36373	Sorghum	plastid	60.33	54.64
Os07t0530100-01	Rice	plastid	59.17	53.35
CDY43825	Canola	mitochondrion	7.6	51.11
GSMUA_AchrUn_...	Banana	cytosol, nucleus	7.93	45.28
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	8.1	30.43
Os07t0529800-01	Rice	extracellular	3.97	20.87
EER97314	Sorghum	cytosol, peroxisome, plastid	3.97	20.87
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	3.97	20.87

Protein Annotations

MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	EntrezGene:831369	UniProt:A0A178UHD6
ProteinID:AED92124.1	ArrayExpress:AT5G15170	EnsemblPlantsGene:AT5G15170	RefSeq:AT5G15170	TAIR:AT5G15170	RefSeq:AT5G15170-TAIR-G
EnsemblPlants:AT5G15170.1	TAIR:AT5G15170.1	EMBL:AY064005	EMBL:AY150498	Unigene:At.27105	ProteinID:CAB89327.1
InterPro:FHA_dom	EMBL:FJ858738	GO:GO:0000012	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004527	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006950	GO:GO:0006974	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0017005	GO:GO:0090305
InterPro:IPR000253	InterPro:IPR027415	RefSeq:NP_197021.2	ProteinID:OAO93376.1	PFAM:PF06087	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020100	PO:PO:0025022	PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	UniProt:Q8H1D9
InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879	SUPFAM:SSF56024	Symbol:TDP1	InterPro:TDP_C	InterPro:Tdp1
UniParc:UPI00000ADA9A	SEG:seg	:	:	:	:

Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]

Coordinates

chr5:-:4925850..4929502

Molecular Weight (calculated)

68142.7 Da

IEP (calculated)

9.176

GRAVY (calculated)

-0.368

Length

605 amino acids

Sequence
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.