CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	79.29	89.23
AT5G15170.1	Thale cress	nucleus	69.99	88.26
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	8.39	67.37
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	37.75	65.9
Solyc03g031820.2.1	Tomato	nucleus	52.29	61.86
KRH61715	Soybean	nucleus	52.42	61.82
VIT_10s0116g00450.t01	Wine grape	plastid	52.16	58.7
PGSC0003DMT400061871	Potato	nucleus	39.19	58.51
TraesCS2B01G244300.1	Wheat	plastid	48.36	55.24
HORVU2Hr1G045220.3	Barley	plastid	48.23	55.01
TraesCS2A01G218900.1	Wheat	plastid	48.23	55.01
TraesCS2D01G224500.1	Wheat	plastid	47.97	54.71
Zm00001d021669_P008	Maize	plastid	47.58	54.59
KXG36373	Sorghum	plastid	47.71	54.49
Os07t0530100-01	Rice	plastid	46.92	53.35
CDY43825	Canola	mitochondrion	5.9	50.0
GSMUA_AchrUn_...	Banana	cytosol, nucleus	6.55	47.17
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	6.68	31.68
Os07t0529800-01	Rice	extracellular	3.41	22.61
EER97314	Sorghum	cytosol, peroxisome, plastid	3.41	22.61
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	3.41	22.61

Protein Annotations

MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	GO:A0A078C6J3	EnsemblPlants:CDX70598
ProteinID:CDX70598	ProteinID:CDX70598.1	InterPro:FHA_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00140442001	InterPro:IPR000253	InterPro:IPR027415	PFAM:PF06087
PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879	SUPFAM:SSF56024	InterPro:TDP_C
InterPro:Tdp1	UniParc:UPI0004EDECEE	SEG:seg	:	:	:

Description

BnaC03g06820D

Coordinates

chrLK031791:-:1176357..1180654

Molecular Weight (calculated)

85458.7 Da

IEP (calculated)

9.067

GRAVY (calculated)

-0.433

Length

763 amino acids

Sequence
(BLAST)

001: MRGEADTWPE MEAVARKMAE EVETESSGSS EAETESPRSV GRWGAAPVTR KTGKERVHSQ VLKIREEDLC VLVEDKAANG RFVQHPRRLS FVLISRPNLP
101: CSPLSGKTLV EAFYNDSLSG TRIKALIPTL SSLFQLPKTE TSLSLDSASV IQVAYLIPLK PDLKEDNSSP RITLSEGQNT IGRLNVSTTD KRLSRKHITI
201: TTSTSGSASL SVEGTNPVVV RSSGERKKVN PRGEVSLVND DLIELIPGHH FFKLVLLPRE SERGSHERAA KKARKEGDGS DDVEAIRRFC PASEKLHSTF
301: RLLSVDGLPD WANTSCVSIN DVVEGDVVAA ILSNYMVDLD WLLSACPKLV NIPQVMVIHG EGDARQEYIQ RKKPANWILH KPRLPISFGT HHSKAIFLVY
401: PRGVRVVVHT ANLIHVDWNN KSQGLWMQDF PFKDDDDDKD STKSCGFEDD LVDYLAVLKW PEFTASLPGL GNVKINAAFF RKFDYSNATV RLVASVPGYH
501: TGSNMRKWGH MKLRTILQEC VFDREFRRSP LVYQFSSLGS LDEKWLAEFG ASLSSGITED RTPLGHGDPL IIWPTVEDVR CSLEGYAAGN AIPSPLKNVE
601: KPFLKKYWAK WKADHSARSR AMPHIKTFTR YSDQKLAWFL LTSSNLSKAA WGALQKNNSQ LMIRSYELGV LFLPSPVKTQ GCSFSCTDNN SSTKKVKQET
701: KGEVEKRSKL VTMTWQGNRD SPEIISLPVP YQLPPKPYSS EDVPWSWDRG YSKKDVYGQV WPR

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.