Factsheet for Solyc03g031820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061871	Potato	nucleus	74.11	93.54
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	10.54	71.58
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	45.58	67.28
AT5G15170.1	Thale cress	nucleus	61.71	65.79
Bra006287.1-P	Field mustard	nucleus	62.02	65.36
KRH61715	Soybean	nucleus	64.5	64.3
VIT_10s0116g00450.t01	Wine grape	plastid	67.44	64.16
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	62.33	59.29
TraesCS2B01G244300.1	Wheat	plastid	59.53	57.48
HORVU2Hr1G045220.3	Barley	plastid	59.38	57.25
TraesCS2A01G218900.1	Wheat	plastid	59.38	57.25
TraesCS2D01G224500.1	Wheat	plastid	59.22	57.1
KXG36373	Sorghum	plastid	59.07	57.04
Zm00001d021669_P008	Maize	plastid	58.29	56.54
Os07t0530100-01	Rice	plastid	58.29	56.04
GSMUA_AchrUn_...	Banana	cytosol, nucleus	8.68	52.83
CDX70598	Canola	nucleus	61.86	52.29
CDY43825	Canola	mitochondrion	6.2	44.44
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	10.23	40.99
EER97314	Sorghum	cytosol, peroxisome, plastid	3.57	20.0
Os07t0529800-01	Rice	extracellular	3.57	20.0
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	3.57	20.0

Protein Annotations

MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	InterPro:FHA_dom	GO:GO:0000012
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006950	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0017005	InterPro:IPR000253
InterPro:IPR027415	UniProt:K4BFF4	PFAM:PF06087	PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	InterPro:SMAD_FHA_dom_sf
SUPFAM:SSF49879	SUPFAM:SSF56024	EnsemblPlantsGene:Solyc03g031820.2	EnsemblPlants:Solyc03g031820.2.1	InterPro:TDP_C	InterPro:Tdp1
UniParc:UPI0002767627	:	:	:	:	:

Description

Tyrosyl-DNA phosphodiesterase 1 [Source:Projected from Arabidopsis thaliana (AT5G15170) UniProtKB/Swiss-Prot;Acc:Q8H1D9]

Coordinates

chr3:-:4290632..4301669

Molecular Weight (calculated)

72541.1 Da

IEP (calculated)

9.341

GRAVY (calculated)

-0.381

Length

645 amino acids

Sequence
(BLAST)

001: MSISSQVGFL VPLSDNLEED GKSSIPKIPL SEGPNCVGRD CIPVTDKRLS RKHLIITATC TGSADVVVEG TNPVVIRSKG ERKKLLSRER WKLGSDDIIE
101: LIPGHYLFKY VSAACKDETS PGNKQKRPFS EESITDKGQM HGKKKAREVC EEASELIMLH NNGQETNSSA EAIRQFRVPK HKLPLTFRLM RVRELPAWAN
201: SEAVSINDVI QGNVLVAILS NYMVDMDWLL SACPTLKRIP NVLVIHGEGD GTMEYMKRSK IANWILHKPS LPIAYGTHHS KAMLLVYPTG VRVIIHTANL
301: ISIDWNNKSQ GLWMQDFPWK NQNNLDKDGG FENDLVDYLS ALKWPEFTVN IPAFGSCKIN SSFFKKFDYS SASVRLIASV PGYHSGSSLR KWGHMKLRTV
401: LQECTFSKEF QKSPLIYQFS SLGSLDEKWM TEFASSMSAG VTDDKKPLGI GEPMIVWPNV EDVRCSLEGY AAGSAIPSPS KNVEKEFLKK YWAKWKASHT
501: GRCRAMPHIK TFLRYNGQSL AWFLLTSSNL SKAAWGALQK NNSQLMIRSY ELGVLFLPSS VKRGCGFSCT NNGYPSEDET SIHEGKKIKL VTLAWQGKGN
601: DDSSEVIKLP VAYELPPKPY SLEDIPWSWD RRYTKKDIYG QVWPR

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.