Factsheet for GSMUA_AchrUn_randomP25360_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061871	Potato	nucleus	52.83	10.96
Solyc03g031820.2.1	Tomato	nucleus	52.83	8.68
AT5G15170.1	Thale cress	nucleus	45.28	7.93
Bra006287.1-P	Field mustard	nucleus	44.34	7.68
VIT_10s0116g00450.t01	Wine grape	plastid	49.06	7.67
KRH61715	Soybean	nucleus	45.28	7.42
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	45.28	7.08
CDX70598	Canola	nucleus	47.17	6.55
CDY43825	Canola	mitochondrion	4.72	5.56
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	5.66	3.73
EER97314	Sorghum	cytosol, peroxisome, plastid	2.83	2.61
Os07t0529800-01	Rice	extracellular	2.83	2.61
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	2.83	2.61
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	5.66	1.37

Protein Annotations

Gene3D:3.30.870.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_AchrUn_randomG25360_001
EnsemblPlants:GSMUA_AchrUn_randomP25360_001	EnsemblPlants:GSMUA_AchrUn_randomT25360_001	UniProt:M0UC94	PFAM:PF06087	SUPFAM:SSF56024	InterPro:Tdp1
UniParc:UPI000296CFA6	:	:	:	:	:

Description

tyrosyl-DNA phosphodiesterase 1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG25360_001]

Coordinates

chrchrUn_random:+:125357341..125359351

Molecular Weight (calculated)

11802.0 Da

IEP (calculated)

5.563

GRAVY (calculated)

-0.142

Length

106 amino acids

Sequence
(BLAST)

001: ENDGLRQDNS TEASKSCDPQ FKTASFTSCD DIEAIRHFRV TKERLSLTFR LMQVQGLPAW ANSSSVTIGD VIQQGNVLVA ILSNYMVDID WLLSGKFHTL
101: HAGPFI

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.