Factsheet for VIT_10s0116g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	46.61	72.31
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	9.73	69.47
Solyc03g031820.2.1	Tomato	nucleus	64.16	67.44
KRH61715	Soybean	nucleus	64.31	67.39
AT5G15170.1	Thale cress	nucleus	59.73	66.94
PGSC0003DMT400061871	Potato	nucleus	49.56	65.75
Bra006287.1-P	Field mustard	nucleus	58.55	64.87
TraesCS2B01G244300.1	Wheat	plastid	60.32	61.23
HORVU2Hr1G045220.3	Barley	plastid	60.03	60.84
TraesCS2A01G218900.1	Wheat	plastid	60.03	60.84
TraesCS2D01G224500.1	Wheat	plastid	59.73	60.54
KXG36373	Sorghum	plastid	59.44	60.33
Zm00001d021669_P008	Maize	plastid	59.0	60.15
Os07t0530100-01	Rice	plastid	58.55	59.17
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	58.55	58.55
CDX70598	Canola	nucleus	58.7	52.16
GSMUA_AchrUn_...	Banana	cytosol, nucleus	7.67	49.06
CDY43825	Canola	mitochondrion	6.19	46.67
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	10.18	42.86
EER97314	Sorghum	cytosol, peroxisome, plastid	3.39	20.0
Os07t0529800-01	Rice	extracellular	3.39	20.0
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	3.39	20.0

Protein Annotations

EntrezGene:100247070	MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	ProteinID:CBI23170
ProteinID:CBI23170.3	UniProt:E0CVK9	InterPro:FHA_dom	EMBL:FN595248	GO:GO:0000012	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006950	GO:GO:0008081	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0017005	InterPro:IPR000253	InterPro:IPR027415
PFAM:PF06087	PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879	SUPFAM:SSF56024
InterPro:TDP_C	InterPro:Tdp1	UniParc:UPI0001BE2160	ArrayExpress:VIT_10s0116g00450	EnsemblPlantsGene:VIT_10s0116g00450	EnsemblPlants:VIT_10s0116g00450.t01
unigene:Vvi.9065	RefSeq:XP_010655352.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:208985..219598

Molecular Weight (calculated)

75869.7 Da

IEP (calculated)

9.391

GRAVY (calculated)

-0.381

Length

678 amino acids

Sequence
(BLAST)

001: MSLSQIGFLV PLNRNLEEDT STPKLPIPTG ANVIGRNSIS VSDKRLSRKH LTLIASGNGS VDAVVEGTNP VVVASGNQRK KLRTGEKAVI TNDDIIELIP
101: GHYFFKYVTV AGEKCEKKGN SMDAQNMESN EVSLSRKRMR QVSEDEAFAR KLQAEMENDV LVQERSLVTG KSGYSQASTA SIPSSHMNSE AIRHFSIPKD
201: NLPLTYRLLR VKDLPAWANT SSVSIRDVIQ GDVLIAVLSN YMVDIDWLLS SCPTLAKIPH VLVIHGEGDG TLDHMKKNKP PNWILHKPPL PISFGTHHSK
301: AMLLVYPRGV RVIVHTANLI YVDWNNKSQG LWMQDFPWKV QKELSKGCAF ENDLIDYLSV LKWPEFTANL PALGSFNINS SFFKKFDYSN AVVRLIASVP
401: GYHTGSNLKK WGHMKLCSVL QECIFDKEFQ KSPLAYQFSS LGSLDEKWMT ELASSMSSGS CDDKTPLGLG KPLIIWPTVE DVRCSLEGYA AGNAIPSPQK
501: NVEKEFLKKY WAKWKATHTG RCRAMPHIKT YTRYNGQNLA WFLLTSANLS KAAWGALQKN NSQLMIRSYE LGVLFLPSPI NRGQGFSCTD NGSPSKNKCG
601: LSENTKSQRT KLVTLTWEGN RSSDSSSEVI PLPVPYELPP KQYSSEDVPW SWDRRYYKKD VCGQVWPRHV QLYSSPDS

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.