Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G045160.1 | Barley | cytosol, nucleus | 12.22 | 86.32 |
| TraesCS2B01G244300.1 | Wheat | plastid | 81.37 | 81.74 |
| TraesCS2D01G224500.1 | Wheat | plastid | 81.37 | 81.61 |
| TraesCS2A01G218900.1 | Wheat | plastid | 81.37 | 81.61 |
| HORVU2Hr1G045220.3 | Barley | plastid | 81.37 | 81.61 |
| KXG36373 | Sorghum | plastid | 80.18 | 80.54 |
| Zm00001d021669_P008 | Maize | plastid | 79.73 | 80.45 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion | 44.56 | 68.42 |
| AT5G15170.1 | Thale cress | nucleus | 53.35 | 59.17 |
| Bra006287.1-P | Field mustard | nucleus | 53.8 | 58.99 |
| VIT_10s0116g00450.t01 | Wine grape | plastid | 59.17 | 58.55 |
| Solyc03g031820.2.1 | Tomato | nucleus | 56.04 | 58.29 |
| KRH61715 | Soybean | nucleus | 55.89 | 57.96 |
| PGSC0003DMT400061871 | Potato | nucleus | 42.03 | 55.19 |
| CDX78616 | Canola | endoplasmic reticulum, golgi, vacuole | 53.95 | 53.39 |
| CDX70598 | Canola | nucleus | 53.35 | 46.92 |
| CDY43825 | Canola | mitochondrion | 6.11 | 45.56 |
| Os07t0529800-01 | Rice | extracellular | 3.13 | 18.26 |
Protein Annotations
| MapMan:14.10.2 | Gene3D:2.60.200.20 | Gene3D:3.30.870.10 | Gene3D:3.30.870.20 | EMBL:AK069279 | ProteinID:BAC79984.1 |
| ProteinID:BAF21758.1 | ProteinID:BAT01870.1 | ProteinID:EEE67306.1 | InterPro:FHA_dom | GO:GO:0000012 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003690 | GO:GO:0003697 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006302 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0006950 | GO:GO:0008081 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017005 | GO:GO:0019538 | InterPro:IPR000253 |
| InterPro:IPR027415 | EnsemblPlantsGene:Os07g0530100 | EnsemblPlants:Os07t0530100-01 | PFAM:PF06087 | PANTHER:PTHR12415 | PANTHER:PTHR12415:SF0 |
| UniProt:Q7XHY3 | InterPro:SMAD_FHA_dom_sf | SUPFAM:SSF49879 | SUPFAM:SSF56024 | InterPro:TDP_C | InterPro:Tdp1 |
| UniParc:UPI00001B3AD7 | SEG:seg | : | : | : | : |
Description
Tyrosyl-DNA phosphodiesterase family protein. (Os07t0530100-01)
Coordinates
chr7:-:20739506..20749456
Molecular Weight (calculated)
75332.3 Da
IEP (calculated)
9.504
GRAVY (calculated)
-0.324
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSRVRVG NLVPLNEGNA SSSNGSVSSI PIYLGANVVG RNHLVVVDKR VSRKHLSLHA SADGSIEAVV EGPNPIIVRS EGQRRKVCAQ ERVKIAHDDV
101: LELIPGEYFV KYLNVGDNHK SSTSMGSSDF KKGKRLCEDD TVVIKRNRQI MEDEALARSL QKSFAEESST ISGLGCDQML SSLDSAGFSE RNNERIHSVD
201: YLKDVLSLTF RLMRVQGLPS WTNTSSVTIQ DVIQGEVLLA VLSNYMVDME WLLTACPSLR KVRHVLVIHG EDGASVELLK KVKPANWILH KPPLPISFGT
301: HHSKAMLLVY PQGIRVVVHT ANLIHVDWNN KTQGLWMQDF PWKDAKDVNR SVSFENDLVD YLSAIKWPEF RVNLPVVGDV NINAAFFRKF DYKSSSVRLI
401: GSVPGYHVGP NIKKWGHMKL RSVLEGCTFE QQFCKAPMIY QFSSLGSLDE KWMSEFAFSL SAGKSDNGSP LGIGKPLIVW PTVEDVRTSI EGYAAGSCIP
501: SPQKNVEKDF LRKYWARWKA DHVGRCRAMP HIKTFTRYNG QDIAWFLLTS ANLSKAAWGA LQKNNTQLMI RSYELGVLFL PKTHQSVPQF SCTGKNNSNL
601: NNLAPGKEIK TKLVTLCWKS DEEKEQSTEI IRLPVPYQLP PKPYGTEDVP WSWDKRYTKK DVYGSVWPRH G
101: LELIPGEYFV KYLNVGDNHK SSTSMGSSDF KKGKRLCEDD TVVIKRNRQI MEDEALARSL QKSFAEESST ISGLGCDQML SSLDSAGFSE RNNERIHSVD
201: YLKDVLSLTF RLMRVQGLPS WTNTSSVTIQ DVIQGEVLLA VLSNYMVDME WLLTACPSLR KVRHVLVIHG EDGASVELLK KVKPANWILH KPPLPISFGT
301: HHSKAMLLVY PQGIRVVVHT ANLIHVDWNN KTQGLWMQDF PWKDAKDVNR SVSFENDLVD YLSAIKWPEF RVNLPVVGDV NINAAFFRKF DYKSSSVRLI
401: GSVPGYHVGP NIKKWGHMKL RSVLEGCTFE QQFCKAPMIY QFSSLGSLDE KWMSEFAFSL SAGKSDNGSP LGIGKPLIVW PTVEDVRTSI EGYAAGSCIP
501: SPQKNVEKDF LRKYWARWKA DHVGRCRAMP HIKTFTRYNG QDIAWFLLTS ANLSKAAWGA LQKNNTQLMI RSYELGVLFL PKTHQSVPQF SCTGKNNSNL
601: NNLAPGKEIK TKLVTLCWKS DEEKEQSTEI IRLPVPYQLP PKPYGTEDVP WSWDKRYTKK DVYGSVWPRH G
001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
Arabidopsis Description
TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.