CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006287.1-P	Field mustard	nucleus	89.23	98.86
AT5G15170.1	Thale cress	nucleus	79.2	88.76
CDX70598	Canola	nucleus	89.23	79.29
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	9.44	67.37
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	42.48	65.9
Solyc03g031820.2.1	Tomato	nucleus	59.29	62.33
KRH61715	Soybean	nucleus	59.0	61.82
PGSC0003DMT400061871	Potato	nucleus	44.69	59.3
VIT_10s0116g00450.t01	Wine grape	plastid	58.55	58.55
TraesCS2B01G244300.1	Wheat	plastid	55.46	56.29
HORVU2Hr1G045220.3	Barley	plastid	55.31	56.05
TraesCS2A01G218900.1	Wheat	plastid	55.31	56.05
TraesCS2D01G224500.1	Wheat	plastid	55.16	55.9
Zm00001d021669_P008	Maize	plastid	54.13	55.19
KXG36373	Sorghum	plastid	54.28	55.09
Os07t0530100-01	Rice	plastid	53.39	53.95
CDY43825	Canola	mitochondrion	6.49	48.89
GSMUA_AchrUn_...	Banana	cytosol, nucleus	7.08	45.28
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	7.52	31.68
Os07t0529800-01	Rice	extracellular	3.69	21.74
EER97314	Sorghum	cytosol, peroxisome, plastid	3.69	21.74
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	3.69	21.74

Protein Annotations

MapMan:14.10.2	Gene3D:2.60.200.20	Gene3D:3.30.870.10	Gene3D:3.30.870.20	GO:A0A078CN66	EnsemblPlants:CDX78616
ProteinID:CDX78616	ProteinID:CDX78616.1	InterPro:FHA_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00130030001	InterPro:IPR000253	InterPro:IPR027415	PFAM:PF06087
PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	InterPro:SMAD_FHA_dom_sf	SUPFAM:SSF49879	SUPFAM:SSF56024	SignalP:SignalP-noTM
InterPro:TDP_C	InterPro:Tdp1	UniParc:UPI0004EDE4D1	:	:	:

Description

BnaA03g05280D

Coordinates

chrLK031815:-:1547791..1552806

Molecular Weight (calculated)

76375.6 Da

IEP (calculated)

9.169

GRAVY (calculated)

-0.288

Length

678 amino acids

Sequence
(BLAST)

001: MLYLFFTFIS LLCLYQLCSH ILHTRTYTLE ALLNGILSGT RIKALILTLS LFQLPKPETS LSLDSVSVIQ VAYLIPLKPD LKEDNSSPRI TLSEGPNTIG
101: RLNVSTTDKR LSRKHITITP SASGSASLSV EGTNPVVVRS SGERKKVNPR GEVSLVNDDL IELIPGHHFF KLVLLPRESE RGSYERAAKK ARKEGDDVEA
201: IRSFCPDSEK LPSTFRLLSV DGLPDWANTS CVSINDVVEG DVVAAILSNY MVDLDWLLSA CPKLVNIPQV MVVHGEGDGR QEYIQRKKPA NWILHKPRLP
301: ISFGTHHSKA IFLVYPRGVR VVVHTANLIH VDWNNKSQGL WMQDFPWKSD DDNIDTPKVC GFEDDLVDYL AVLKWPEFTA CLPGRGNVKI NAAFFRKFDY
401: SSATVRLIAS VPGYHTGSNM RKWGHMKLRT ILQECVFDRE FRRSPLVYQF SSLGSLDEKW LAEFGASLSS GITEDRTPLG HGDPLIIWPT VEDVRCSLEG
501: YAAGNAIPSP LKNVEKPFLK KYWAKWKADH SARSRAMPHI KTFTRYSDQK IAWFLLTSSN LSKAAWGALQ KNNSQLMIRS YELGVLFLPS PVKTQACNFS
601: CTDNNSSTKK VKQETKGEVE KRSKLVTMTW QGDRDSPEII SLPVPYQLPP KPYSSEDVPW SWDRGYSKKD VYGQVWPR

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.