Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G218900.1 | Wheat | plastid | 97.46 | 97.46 |
| TraesCS2D01G224500.1 | Wheat | plastid | 96.71 | 96.71 |
| TraesCS2B01G244300.1 | Wheat | plastid | 96.56 | 96.71 |
| HORVU2Hr1G045160.1 | Barley | cytosol, nucleus | 13.0 | 91.58 |
| KXG36373 | Sorghum | plastid | 82.36 | 82.48 |
| Zm00001d021669_P008 | Maize | plastid | 81.46 | 81.95 |
| Os07t0530100-01 | Rice | plastid | 81.61 | 81.37 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion | 45.29 | 69.34 |
| Bra006287.1-P | Field mustard | nucleus | 56.05 | 61.27 |
| AT5G15170.1 | Thale cress | nucleus | 55.16 | 60.99 |
| VIT_10s0116g00450.t01 | Wine grape | plastid | 60.84 | 60.03 |
| Solyc03g031820.2.1 | Tomato | nucleus | 57.25 | 59.38 |
| KRH61715 | Soybean | nucleus | 55.31 | 57.19 |
| PGSC0003DMT400061871 | Potato | nucleus | 42.75 | 55.97 |
| CDX78616 | Canola | endoplasmic reticulum, golgi, vacuole | 56.05 | 55.31 |
| CDX70598 | Canola | nucleus | 55.01 | 48.23 |
| CDY43825 | Canola | mitochondrion | 6.28 | 46.67 |
Protein Annotations
| MapMan:14.10.2 | Gene3D:2.60.200.20 | Gene3D:3.30.870.10 | Gene3D:3.30.870.20 | UniProt:A0A287HVD7 | InterPro:FHA_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:HORVU2Hr1G045220 |
| EnsemblPlants:HORVU2Hr1G045220.3 | InterPro:IPR000253 | InterPro:IPR027415 | PFAM:PF06087 | PANTHER:PTHR12415 | PANTHER:PTHR12415:SF0 |
| InterPro:SMAD_FHA_dom_sf | SUPFAM:SSF49879 | SUPFAM:SSF56024 | InterPro:TDP_C | InterPro:Tdp1 | UniParc:UPI000B47049D |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:236575497..236587629
Molecular Weight (calculated)
75098.2 Da
IEP (calculated)
9.461
GRAVY (calculated)
-0.347
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSRVRVG TLVPFVEGKS GSPNASSLPM PSIPIFEGSN VVGRSNLVAV DKRVSRKHLS LRAVPDGSVE VVVEGTNPIV VRSEGQRRKV CAQQRAKIMP
101: DDVLELIPGE YFMKYVNMSD ERKISASVDS HDLKKGKRHS EEDSVAAKRN RQVMEDEALA RTLQESFAEE SASVTEVLSS LDSAGSSERN KERTHSVGPL
201: KDVLPLSFRL MRVQGLPSWT NTSTVTIQDV IQGEVLLAVL SNYMVDMDWL LTACPSLRKV PHVLVLHGED GASLERLKKT KPTNWILHKP PLPISFGTHH
301: SKAMLLVYPQ GIRVVVHTAN LIHVDWNNKS QGLWAQDFPW KEANDMSTNI GFENDLVDYL RALKWPEFRV NLPVVGDVNI NAAFFRKFDY SSSTVRLIGS
401: VPGYHVGPNM KKWGHMKLRS VLEECVFEKQ FCKSPLIYQF SSLGSLDEKW MSEFACSLSA GKADDGSQLG IGKPLIVWPT VEDVRCSIEG YAAGSCIPSP
501: QKNVEKDFLR KYWSRWKADH VGRCRAMPHI KTFTRYNGQN IAWFLLTSSN LSKAAWGALQ KNNTQLMIRS YELGVLFLPK TLQSVPQFSC TDKSRSNLDK
601: LALGKNIKTK LVTLCWKGDE EKDPSAEVVR LPVPYQLPPQ LYGPEDVPWS WDRRYTKKDV YGSVWPRHG
101: DDVLELIPGE YFMKYVNMSD ERKISASVDS HDLKKGKRHS EEDSVAAKRN RQVMEDEALA RTLQESFAEE SASVTEVLSS LDSAGSSERN KERTHSVGPL
201: KDVLPLSFRL MRVQGLPSWT NTSTVTIQDV IQGEVLLAVL SNYMVDMDWL LTACPSLRKV PHVLVLHGED GASLERLKKT KPTNWILHKP PLPISFGTHH
301: SKAMLLVYPQ GIRVVVHTAN LIHVDWNNKS QGLWAQDFPW KEANDMSTNI GFENDLVDYL RALKWPEFRV NLPVVGDVNI NAAFFRKFDY SSSTVRLIGS
401: VPGYHVGPNM KKWGHMKLRS VLEECVFEKQ FCKSPLIYQF SSLGSLDEKW MSEFACSLSA GKADDGSQLG IGKPLIVWPT VEDVRCSIEG YAAGSCIPSP
501: QKNVEKDFLR KYWSRWKADH VGRCRAMPHI KTFTRYNGQN IAWFLLTSSN LSKAAWGALQ KNNTQLMIRS YELGVLFLPK TLQSVPQFSC TDKSRSNLDK
601: LALGKNIKTK LVTLCWKGDE EKDPSAEVVR LPVPYQLPPQ LYGPEDVPWS WDRRYTKKDV YGSVWPRHG
001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
Arabidopsis Description
TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.