CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	golgi, mitochondrion	43.33	8.92
PGSC0003DMT400061871	Potato	nucleus	45.56	8.02
AT5G15170.1	Thale cress	nucleus	51.11	7.6
KRH61715	Soybean	nucleus	48.89	6.8
CDX78616	Canola	endoplasmic reticulum, golgi, vacuole	48.89	6.49
TraesCS2B01G244300.1	Wheat	plastid	46.67	6.29
TraesCS2D01G224500.1	Wheat	plastid	46.67	6.28
TraesCS2A01G218900.1	Wheat	plastid	46.67	6.28
HORVU2Hr1G045220.3	Barley	plastid	46.67	6.28
Solyc03g031820.2.1	Tomato	nucleus	44.44	6.2
VIT_10s0116g00450.t01	Wine grape	plastid	46.67	6.19
Os07t0530100-01	Rice	plastid	45.56	6.11
KXG36373	Sorghum	plastid	44.44	5.99
CDX70598	Canola	nucleus	50.0	5.9
Zm00001d021669_P008	Maize	plastid	43.33	5.86
GSMUA_AchrUn_...	Banana	cytosol, nucleus	5.56	4.72
Os07t0529800-01	Rice	extracellular	3.33	2.61
EER97314	Sorghum	cytosol, peroxisome, plastid	3.33	2.61
Zm00001d021668_P002	Maize	cytoskeleton, cytosol, peroxisome	3.33	2.61
GSMUA_Achr6P21940_001	Banana	endoplasmic reticulum	2.22	1.24
HORVU2Hr1G045160.1	Barley	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.870.10	MapMan:35.1	GO:A0A078HYZ6	UniProt:A0A078HYZ6	EnsemblPlants:CDY43825	ProteinID:CDY43825
ProteinID:CDY43825.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00077340001	PFAM:PF06087
PANTHER:PTHR12415	PANTHER:PTHR12415:SF0	SUPFAM:SSF56024	InterPro:Tdp1	UniParc:UPI0004EEE304	:

Description

BnaC03g14580DBnaC03g14580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYZ6]

Coordinates

chrLK032569:-:103479..104169

Molecular Weight (calculated)

10280.3 Da

IEP (calculated)

7.416

GRAVY (calculated)

-0.350

Length

90 amino acids

Sequence
(BLAST)

1: MEFSVRLRKN LKVIDLNGRP KSQTLILYGT HCSRATFLGY PGGVRVVFLQ TINLIHVDWN NKSQGLWIQD FPWEDNGKDL SEGCEADLTN

Best Arabidopsis Sequence Match ( AT5G15170.1 )
(BLAST)

001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR

Arabidopsis Description

TDP1Tyrosyl-DNA phosphodiesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.