CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00851
KRH40381
KRH61715

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	KRH00851	AT1G01510.1	11889033
AT1G01510.1	KRH40381	AT1G01510.1	11889033
AT1G01510.1	KRH00851	AT1G01510.1	17972097
AT1G01510.1	KRH40381	AT1G01510.1	17972097
AT1G01510.1	KRH00851	AT1G01510.1	21798944
AT1G01510.1	KRH40381	AT1G01510.1	21798944
AT1G01510.1	KRH61715	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00851	Soybean	endoplasmic reticulum	96.27	96.27
VIT_03s0088g00460.t01	Wine grape	cytosol	10.7	83.54
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	79.74	76.4
PGSC0003DMT400000547	Potato	cytosol	73.26	71.63
Solyc01g095040.2.1	Tomato	nucleus	72.61	71.0
AT1G01510.1	Thale cress	cytosol	72.61	70.44
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	71.64	70.05
CDX90038	Canola	mitochondrion, plastid	71.15	67.54
GSMUA_Achr5P10300_001	Banana	cytosol	37.28	65.34
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.32	62.67
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	64.67	62.44
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	64.18	61.97
HORVU1Hr1G049460.1	Barley	cytosol	64.67	61.76
TraesCS4B01G319000.1	Wheat	mitochondrion	52.35	61.64
TraesCS1A01G185300.2	Wheat	cytosol	64.34	61.55
TraesCS1D01G191600.1	Wheat	cytosol	64.18	61.3
TraesCS1B01G193200.1	Wheat	cytosol	63.86	61.09
Os03t0126100-01	Rice	cytosol	43.44	61.05
Os10t0533000-01	Rice	extracellular	64.18	60.92
GSMUA_Achr5P13770_001	Banana	mitochondrion	50.57	60.58
Zm00001d029719_P002	Maize	cytosol	62.72	60.56
OQU92250	Sorghum	mitochondrion	62.72	53.97
GSMUA_Achr5P10290_001	Banana	nucleus	30.15	53.3
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	42.79	48.18
CDY15172	Canola	plastid	70.99	45.96
HORVU4Hr1G083270.5	Barley	mitochondrion	45.38	45.38
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	17.02	44.12

Protein Annotations

EntrezGene:100799136	Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02006036	InterPro:D-isomer_DH_NAD-bd	EnsemblPlantsGene:GLYMA_09G255200
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	UniProt:I1L6F8	EnsemblPlants:KRH40381	ProteinID:KRH40381	ProteinID:KRH40381.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF02826	PANTHER:PTHR43254	SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI0002338905	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:47457267..47464622

Molecular Weight (calculated)

67919.1 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.267

Length

617 amino acids

Sequence
(BLAST)

001: MPHRNNPAPL PLVVTLNCVE DCSLEFESLA GVATVEHVPL SRLSDGKIES AAAVLLHSLA YLPRAAQRRL RSYHLILCLG SADRAVDSAL AADLGLRLVH
101: VDTSRAEEIA DTVMALFLGL LRRTHLLSRH ALSASGWLGS VQPLCRGMRR CRGLVLGIVG ISSSARSLAT RSLAFKMSVL YFDARAEKGK VKFPPAARRM
201: DTLNDLLAAS DLISLHCALT NETMQIINAE CLQHVKPGAF IVNTGSSQLL DDCAVKQLLI DGTLAGCALD GAEGPQWMEA WVKEMPNVLI LPRSADYSEE
301: VWMEIREKAI SILQTFFIDG IIPKNAMSDV EEESEVDNES EQSDQQYNGN ALQIIVREQT DDVHVSPDNS QKKISTQMKE SSSQHQVSSL SQSTSARSEG
401: RRSRSGKKAK KRHTRHKSQQ KHEDPSALEK EGTSQRDDTA MSGTDQALSS SSEDSRNRKT PIESMQEPTG AQVIKSSLRL SGNCTELLKD GYIIALYARD
501: CSALHVSRQR VKGGGWIMDS MSNVSKRDPA AQFLIIFRSK DTIGLRSLAA GGKLLQINRR MEFVFASHSF DVWENWTLEG SLQECRLVNC RNPSAVLDVR
601: VEILATVGED GVTRWLE

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.