Factsheet for GSMUA_Achr2P11860_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P03730_001
GSMUA_Achr2P11860_001
GSMUA_Achr5P10290_001
GSMUA_Achr5P10300_001
GSMUA_Achr5P13770_001
GSMUA_Achr6P21940_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	GSMUA_Achr1P03730_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr2P11860_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr5P10290_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr5P10300_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr5P13770_001	AT1G01510.1	11889033
AT1G01510.1	GSMUA_Achr1P03730_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr2P11860_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr5P10290_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr5P10300_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr5P13770_001	AT1G01510.1	17972097
AT1G01510.1	GSMUA_Achr1P03730_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr2P11860_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr5P10290_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr5P10300_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr5P13770_001	AT1G01510.1	21798944
AT1G01510.1	GSMUA_Achr6P21940_001	AT5G15170.1	21798944
AT1G01510.1	GSMUA_AchrUn_...	AT5G15170.1	21798944
AT1G01510.1	GSMUA_AchrUn_...	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P10290_001	Banana	nucleus	34.87	23.78
Os03t0126100-01	Rice	cytosol	32.77	17.77
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	46.22	17.08
TraesCS1A01G185300.2	Wheat	cytosol	46.22	17.05
TraesCS1B01G193200.1	Wheat	cytosol	46.22	17.05
HORVU1Hr1G049460.1	Barley	cytosol	46.22	17.03
KRH40381	Soybean	endoplasmic reticulum	44.12	17.02
TraesCS1D01G191600.1	Wheat	cytosol	45.8	16.87
Solyc01g095040.2.1	Tomato	nucleus	44.54	16.8
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	44.96	16.64
PGSC0003DMT400000547	Potato	cytosol	44.12	16.64
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	44.54	16.59
KRH00851	Soybean	endoplasmic reticulum	42.86	16.53
Os10t0533000-01	Rice	extracellular	44.96	16.46
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	44.12	16.43
AT1G01510.1	Thale cress	cytosol	42.44	15.88
Zm00001d029719_P002	Maize	cytosol	42.44	15.81
TraesCS4B01G319000.1	Wheat	mitochondrion	34.45	15.65
GSMUA_Achr5P13770_001	Banana	mitochondrion	33.61	15.53
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	40.34	15.21
CDX90038	Canola	mitochondrion, plastid	41.18	15.08
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	33.61	14.6
OQU92250	Sorghum	mitochondrion	42.86	14.23
GSMUA_Achr5P10300_001	Banana	cytosol	15.55	10.51
CDY15172	Canola	plastid	40.76	10.18
HORVU4Hr1G083270.5	Barley	mitochondrion	25.21	9.72
VIT_03s0088g00460.t01	Wine grape	cytosol	0.84	2.53

Protein Annotations

EnsemblPlants:GSMUA_Achr2P11860_001	EnsemblPlants:GSMUA_Achr2T11860_001	EnsemblPlantsGene:GSMUA_Achr2G11860_001	PANTHER:PTHR43254	SEG:seg	UniParc:UPI000296AF8E
UniProt:M0S777	MapMan:35.1	:	:	:	:

Description

Putative Angustifolia [Source:GMGC_GENE;Acc:GSMUA_Achr2G11860_001]

Coordinates

chr2:-:14481738..14486006

Molecular Weight (calculated)

26131.8 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.084

Length

238 amino acids

Sequence
(BLAST)

001: MSRGDETLQR RQAAAVEHTG LSGGRIECAA AVLLHSLALV PRAASAPVSS PSASARPRCR PRPPPRPRRC QPRRGGGSRK QVELSPELDQ KPVDLLKDDF
101: VVALHARDNL GFHVARQRVS EMAGSLDTIP NAAKRDPAAK VPSYQHLFIQ DILGLQSFSA GYLPQGLIFY PLYIIRSLLD LGICICSHSL DVWNRWTLEG
201: CVLEHLKLVY CRKPLAVLDV SIKILAVVGE DGVTRCFD

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.