Factsheet for VIT_15s0046g02250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0088g00460.t01
VIT_10s0116g00450.t01
VIT_15s0046g02250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	VIT_03s0088g00460.t01	AT1G01510.1	11889033
AT1G01510.1	VIT_15s0046g02250.t01	AT1G01510.1	11889033
AT1G01510.1	VIT_03s0088g00460.t01	AT1G01510.1	17972097
AT1G01510.1	VIT_15s0046g02250.t01	AT1G01510.1	17972097
AT1G01510.1	VIT_03s0088g00460.t01	AT1G01510.1	21798944
AT1G01510.1	VIT_15s0046g02250.t01	AT1G01510.1	21798944
AT1G01510.1	VIT_10s0116g00450.t01	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0088g00460.t01	Wine grape	cytosol	11.34	92.41
KRH40381	Soybean	endoplasmic reticulum	76.4	79.74
KRH00851	Soybean	endoplasmic reticulum	76.09	79.42
PGSC0003DMT400000547	Potato	cytosol	76.55	78.13
Solyc01g095040.2.1	Tomato	nucleus	75.93	77.5
AT1G01510.1	Thale cress	cytosol	70.5	71.38
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	69.41	70.84
GSMUA_Achr5P10300_001	Banana	cytosol	37.58	68.75
CDX90038	Canola	mitochondrion, plastid	68.63	68.0
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	66.3	66.82
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	66.15	66.67
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.99	66.1
TraesCS4B01G319000.1	Wheat	mitochondrion	53.73	66.03
GSMUA_Achr5P13770_001	Banana	mitochondrion	52.8	66.02
Os03t0126100-01	Rice	cytosol	44.88	65.83
Zm00001d029719_P002	Maize	cytosol	64.75	65.26
TraesCS1A01G185300.2	Wheat	cytosol	64.91	64.81
TraesCS1D01G191600.1	Wheat	cytosol	64.91	64.71
HORVU1Hr1G049460.1	Barley	cytosol	64.75	64.55
TraesCS1B01G193200.1	Wheat	cytosol	64.6	64.5
Os10t0533000-01	Rice	extracellular	64.75	64.15
GSMUA_Achr5P10290_001	Banana	nucleus	33.39	61.6
OQU92250	Sorghum	mitochondrion	64.91	58.3
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	44.88	52.74
HORVU4Hr1G083270.5	Barley	mitochondrion	46.74	48.78
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	17.08	46.22
CDY15172	Canola	plastid	68.32	46.17

Protein Annotations

EntrezGene:100243152	wikigene:100243152	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CCB62443	ProteinID:CCB62443.1
InterPro:D-isomer_DH_NAD-bd	UniProt:F6I647	EMBL:FN596755	GO:GO:0000003	GO:GO:0000166	GO:GO:0000226
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0005829	GO:GO:0006950	GO:GO:0006970
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009628	GO:GO:0009651
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009965	GO:GO:0009987	GO:GO:0010091
GO:GO:0010482	GO:GO:0010494	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0031129
GO:GO:0034063	GO:GO:0040007	GO:GO:0042802	GO:GO:0042803	GO:GO:0042814	GO:GO:0045604
GO:GO:0048444	GO:GO:0048530	GO:GO:0051287	GO:GO:0055114	GO:GO:2000039	EntrezGene:LOC100243152
wikigene:LOC100243152	InterPro:NAD(P)-bd_dom_sf	PFAM:PF02826	PANTHER:PTHR43254	SUPFAM:SSF51735	SUPFAM:SSF52283
UniParc:UPI00015CAD0B	ArrayExpress:VIT_15s0046g02250	EnsemblPlantsGene:VIT_15s0046g02250	EnsemblPlants:VIT_15s0046g02250.t01	RefSeq:XP_002275405	RefSeq:XP_002275405.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:19020253..19033898

Molecular Weight (calculated)

70940.3 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.313

Length

644 amino acids

Sequence
(BLAST)

001: MTTIVRDSGR SSASAAHHHR SAPLPLVVSL NCIDDPSLEQ ESLSGIASVE HVSLARLSDG KIESAAAVLI HSLAYLPRAA QRRLRPWQLL LCLGSSDRSV
101: DSALAADLGL RLVHVDTSRA EEVADTVMAL FLGLLRRTHL LSRHTLSASG WLGSVQPLCR GMRRCRGLVL GIVGRSASAR SLATRSLAFK MNVLYFDVQE
201: GKGKLSRSIT FPPAARRMDT LNDLLAASDL VSLHCTLTNE TVQIINAECL QHIKPGAFLV NTGSSQLLDD CALKQLLIDG TIAGCALDGA EGPQWMEAWV
301: KEMPNVLILP RSADYSEEVW MEIREKTICI LQTYFFDGVI PKNTVSDEED EESEIVYENE QFDKQYKEIA LQGSVGEQLT DDVLVSPESS QKKGTNQSNE
401: SPSQHQGSGL SQNTTNRSEG KRSRSGKKAK KRHARQRSLQ KSDDPSALEK ESTSHREDDT AMSGTDQVLS SSSRFASPED SRSRKTPIES VQESTSEQLL
501: KSSMRLSKPG EVLLKDGYVI ALHARDRAAL HVSRQRVQGG GWFLDTMSNV TKRDPAAQFL IAFRSKDTIG LRSFAAGGKL LQINRRMEFV FASHSFDVWE
601: SWMLEGSLEE CRLVNCRNPL AVLDVRVEIL AAVGEEDGVT RWLD

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.