CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, vacuole
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70598
CDX78616
CDX90038
CDY15172
CDY43825

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	CDX90038	AT1G01510.1	11889033
AT1G01510.1	CDY15172	AT1G01510.1	11889033
AT1G01510.1	CDX90038	AT1G01510.1	17972097
AT1G01510.1	CDY15172	AT1G01510.1	17972097
AT1G01510.1	CDX90038	AT1G01510.1	21798944
AT1G01510.1	CDY15172	AT1G01510.1	21798944
AT1G01510.1	CDX70598	AT5G15170.1	21798944
AT1G01510.1	CDX78616	AT5G15170.1	21798944
AT1G01510.1	CDY43825	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	93.54	96.36
AT1G01510.1	Thale cress	cytosol	87.69	89.62
VIT_03s0088g00460.t01	Wine grape	cytosol	10.0	82.28
KRH40381	Soybean	endoplasmic reticulum	67.54	71.15
KRH00851	Soybean	endoplasmic reticulum	66.92	70.5
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	68.0	68.63
PGSC0003DMT400000547	Potato	cytosol	65.38	67.35
Solyc01g095040.2.1	Tomato	nucleus	65.08	67.04
CDY15172	Canola	plastid	95.85	65.37
GSMUA_Achr5P10300_001	Banana	cytosol	35.23	65.06
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	59.08	60.09
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	59.38	60.03
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	58.62	59.62
GSMUA_Achr5P13770_001	Banana	mitochondrion	47.23	59.61
TraesCS4B01G319000.1	Wheat	mitochondrion	48.0	59.54
HORVU1Hr1G049460.1	Barley	cytosol	58.46	58.82
TraesCS1A01G185300.2	Wheat	cytosol	58.31	58.76
Os03t0126100-01	Rice	cytosol	39.54	58.54
Os10t0533000-01	Rice	extracellular	58.46	58.46
TraesCS1D01G191600.1	Wheat	cytosol	58.0	58.36
Zm00001d029719_P002	Maize	cytosol	57.23	58.22
TraesCS1B01G193200.1	Wheat	cytosol	57.69	58.14
OQU92250	Sorghum	mitochondrion	58.0	52.58
GSMUA_Achr5P10290_001	Banana	nucleus	27.54	51.29
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	38.77	45.99
HORVU4Hr1G083270.5	Barley	mitochondrion	41.54	43.76
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	15.08	41.18

Protein Annotations

EnsemblPlants:CDX90038	EnsemblPlantsGene:GSBRNA2T00150540001	Gene3D:3.40.50.720	GO:A0A078DS76	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	InterPro:D-isomer_DH_NAD-bd
InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43254	PFAM:PF02826	ProteinID:CDX90038	ProteinID:CDX90038.1	SEG:seg
SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI0004EE2B92	MapMan:35.1	:	:

Description

BnaA10g00440D

Coordinates

chrLK031861:+:1364833..1367819

Molecular Weight (calculated)

72051.2 Da

IEP (calculated)

6.668

GRAVY (calculated)

-0.225

Length

650 amino acids

Sequence
(BLAST)

001: MFYLCSWFWH CVNMCNTLIG SSEKMSKIRS SATMSHREQP SPLVVTLNCV EDCALEQDSL AGVAGVEYVP LSRIADGKIE SATAVLLHSL AYLPRAAQRR
101: LRPHQLILCL GSADRAVDST LAADLGLRLV HVDTSRAEEI ADTVMALILG LLRRTHLLSR HALSASGWLG SLQPLCRGMR RCRGMVLGII GRSVSARYLA
201: SRSLAFKMSV LYFDVPEGDE ERIRPSRFPR AARRMDTLND LLAASDVISL HCALTDNTVQ ILNAECLQHI KPGAFLVNTG SCQLLDDCAV KQLLIDGTIA
301: GCAIDGAEGP QWMEAWVKEM PNVLILPRSA DYSEEVWMEI REKAISILQS FFLDGVIPTN TVSDEESEAS EEEEEEVSPI RHGKLALVES TSRQQQGEST
401: LTSTEIVPIE ACEFKESLSP GQNTAIKPEV RRSRSGKKAK KRHSQQKHMQ RAEGSSGIHE ESSTSRRDDI AMSDSEEVLS SSSRCVSPED SRSRKTPLEV
501: MQQNQLVRSS KKFIGKSSEL LKDGYVIAMY AKDLSGLHVS RQRTKNGGWF LDTLSNVSKR DPAAQFIIAY RNKDTVGLRS FAAGGKLLQI NRRMEFVFAS
601: HSFDVWESWS LEGSLDECRL VNCRNSSASL EVRVEILAIV GEDGVTRWID

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.