Factsheet for VIT_03s0088g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0088g00460.t01
VIT_10s0116g00450.t01
VIT_15s0046g02250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	VIT_03s0088g00460.t01	AT1G01510.1	11889033
AT1G01510.1	VIT_15s0046g02250.t01	AT1G01510.1	11889033
AT1G01510.1	VIT_03s0088g00460.t01	AT1G01510.1	17972097
AT1G01510.1	VIT_15s0046g02250.t01	AT1G01510.1	17972097
AT1G01510.1	VIT_03s0088g00460.t01	AT1G01510.1	21798944
AT1G01510.1	VIT_15s0046g02250.t01	AT1G01510.1	21798944
AT1G01510.1	VIT_10s0116g00450.t01	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P10300_001	Banana	cytosol	81.01	18.18
Os03t0126100-01	Rice	cytosol	82.28	14.81
TraesCS4B01G319000.1	Wheat	mitochondrion	82.28	12.4
GSMUA_Achr5P13770_001	Banana	mitochondrion	75.95	11.65
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	92.41	11.34
HORVU4Hr1G083270.5	Barley	mitochondrion	84.81	10.86
KRH40381	Soybean	endoplasmic reticulum	83.54	10.7
KRH00851	Soybean	endoplasmic reticulum	82.28	10.53
AT1G01510.1	Thale cress	cytosol	84.81	10.53
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	82.28	10.3
Solyc01g095040.2.1	Tomato	nucleus	82.28	10.3
PGSC0003DMT400000547	Potato	cytosol	82.28	10.3
Zm00001d029719_P002	Maize	cytosol	82.28	10.17
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	82.28	10.17
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	82.28	10.17
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	82.28	10.11
CDX90038	Canola	mitochondrion, plastid	82.28	10.0
Os10t0533000-01	Rice	extracellular	81.01	9.85
TraesCS1A01G185300.2	Wheat	cytosol	78.48	9.61
TraesCS1B01G193200.1	Wheat	cytosol	78.48	9.61
HORVU1Hr1G049460.1	Barley	cytosol	78.48	9.6
TraesCS1D01G191600.1	Wheat	cytosol	78.48	9.6
OQU92250	Sorghum	mitochondrion	82.28	9.07
CDY15172	Canola	plastid	82.28	6.82
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	22.78	3.28
GSMUA_Achr5P10290_001	Banana	nucleus	3.8	0.86
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	2.53	0.84

Protein Annotations

ArrayExpress:VIT_03s0088g00460	EMBL:FN595512	EnsemblPlants:VIT_03s0088g00460.t01	EnsemblPlantsGene:VIT_03s0088g00460	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114
InterPro:D-isomer_DH_NAD-bd	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43254	PFAM:PF02826	ProteinID:CCB49631	ProteinID:CCB49631.1
SUPFAM:SSF51735	UniParc:UPI0002108D5E	UniProt:F6HBP9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:-:8630875..8631169

Molecular Weight (calculated)

8368.0 Da

IEP (calculated)

4.008

GRAVY (calculated)

0.224

Length

79 amino acids

Sequence
(BLAST)

1: MDTLNDLLAA CDLVSLHCTL TNETVQITNA ECLQHIKPGA FLVNTGSSPL LDDCALKQLW IDGTIAGCAL DGVETPPRS

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.