Factsheet for Zm00001d027450_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid, secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d021668_P002
Zm00001d021669_P008
Zm00001d027450_P001
Zm00001d029719_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	Zm00001d027450_P001	AT1G01510.1	11889033
AT1G01510.1	Zm00001d029719_P002	AT1G01510.1	11889033
AT1G01510.1	Zm00001d027450_P001	AT1G01510.1	17972097
AT1G01510.1	Zm00001d029719_P002	AT1G01510.1	17972097
AT1G01510.1	Zm00001d027450_P001	AT1G01510.1	21798944
AT1G01510.1	Zm00001d029719_P002	AT1G01510.1	21798944
AT1G01510.1	Zm00001d021668_P002	AT5G15170.1	21798944
AT1G01510.1	Zm00001d021669_P008	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0126100-01	Rice	cytosol	58.32	85.42
TraesCS4B01G319000.1	Wheat	mitochondrion	68.27	83.78
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	82.43	82.94
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	81.96	82.47
VIT_03s0088g00460.t01	Wine grape	cytosol	10.11	82.28
Zm00001d029719_P002	Maize	cytosol	75.58	76.06
GSMUA_Achr5P10300_001	Banana	cytosol	37.64	68.75
GSMUA_Achr5P13770_001	Banana	mitochondrion	54.28	67.77
GSMUA_Achr5P10290_001	Banana	nucleus	35.93	66.19
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	66.1	65.99
KRH00851	Soybean	endoplasmic reticulum	62.99	65.64
PGSC0003DMT400000547	Potato	cytosol	64.39	65.61
KRH40381	Soybean	endoplasmic reticulum	62.67	65.32
Solyc01g095040.2.1	Tomato	nucleus	64.07	65.29
AT1G01510.1	Thale cress	cytosol	61.9	62.58
HORVU4Hr1G083270.5	Barley	mitochondrion	59.88	62.4
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	60.19	61.33
CDX90038	Canola	mitochondrion, plastid	60.03	59.38
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	46.03	54.01
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	16.64	44.96
CDY15172	Canola	plastid	60.03	40.5

Protein Annotations

EMBL:EU971231	EnsemblPlants:Zm00001d027450_P001	EnsemblPlants:Zm00001d027450_T001	EnsemblPlantsGene:Zm00001d027450	EntrezGene:100285198	Gene3D:3.40.50.720
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	InterPro:D-isomer_DH_NAD-bd	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43254	PFAM:PF02826	ProteinID:ONL93188.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI000182F7D5	UniProt:B6U1W6	MapMan:35.1	:

Description

C-terminal binding protein

Coordinates

chr1:-:5528958..5535135

Molecular Weight (calculated)

70035.7 Da

IEP (calculated)

7.029

GRAVY (calculated)

-0.212

Length

643 amino acids

Sequence
(BLAST)

001: MAHSPAPSGG GGGGPLPLLV SLNCLDDLSL EQEGLAGVAA VEHVPLSAVA CGRIEAASAV LLPSLAFLPR AAQRRLRPWQ LLLCLGSADR AADAAAAADL
101: GLRLVHVDAN RAEEVADTVM ALILGLLRRT HLLSCHASSV PAAGWLGSVQ PMCRGMRRCR GLVLGIIGRS AAARCLATRS LAFRMSVLYF DPRYVASGKT
201: KRPSIVFPSA ARRMDTLNDL LAASDLISLH CGLTNETMHI LNADCLQHIK PGAFIVNTGS CQLIDDCALK QLLIDGTIAG CALDGAEGPQ WMEAWVREMP
301: NVLILPRSAD YSEEVWMEIR EKAITMLQSF FFDGVLPSSA ISDEDEEISE AKNEDDYLGP QAKDSQSQIF DTEIDESHIT LESEKKRAIS HHKEPQASGK
401: SVNIGSRSEG RRSRSGKKGK KRPAHRRPQQ KPDDLSAVES DSNYSSRRDD DTAMSSRDQV VSSSSRFASP EDPKYKHKSL SESPMEITSE KKVPVLLSRK
501: YPDKLKDGFI VALRARDNSG YHVARQRVVG GGGWILDVVS NATNRDPAAQ FLVTFKNKDT MGLRSFVAGG KLLQINRKME FVFASHSFDV WESWMLDGSL
601: LEGSKLINCR NPSAVLDICI EILAAPSEED GVTRWLDSPR WGL

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.