Factsheet for PGSC0003DMT400000547

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000547
PGSC0003DMT400061871

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	PGSC0003DMT400000547	AT1G01510.1	11889033
AT1G01510.1	PGSC0003DMT400000547	AT1G01510.1	17972097
AT1G01510.1	PGSC0003DMT400000547	AT1G01510.1	21798944
AT1G01510.1	PGSC0003DMT400061871	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g095040.2.1	Tomato	nucleus	98.57	98.57
VIT_03s0088g00460.t01	Wine grape	cytosol	10.3	82.28
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	78.13	76.55
KRH40381	Soybean	endoplasmic reticulum	71.63	73.26
KRH00851	Soybean	endoplasmic reticulum	71.16	72.77
AT1G01510.1	Thale cress	cytosol	69.41	68.87
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	67.19	67.19
CDX90038	Canola	mitochondrion, plastid	67.35	65.38
GSMUA_Achr5P10300_001	Banana	cytosol	35.97	64.49
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.61	64.39
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	63.71	62.91
TraesCS4B01G319000.1	Wheat	mitochondrion	52.14	62.79
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	63.55	62.75
Zm00001d029719_P002	Maize	cytosol	63.23	62.44
Os10t0533000-01	Rice	extracellular	63.71	61.85
GSMUA_Achr5P13770_001	Banana	mitochondrion	50.24	61.55
Os03t0126100-01	Rice	cytosol	42.79	61.5
HORVU1Hr1G049460.1	Barley	cytosol	62.92	61.46
TraesCS1A01G185300.2	Wheat	cytosol	62.76	61.4
TraesCS1D01G191600.1	Wheat	cytosol	62.6	61.15
TraesCS1B01G193200.1	Wheat	cytosol	62.44	61.09
OQU92250	Sorghum	mitochondrion	63.23	55.65
GSMUA_Achr5P10290_001	Banana	nucleus	29.95	54.15
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	44.37	51.09
HORVU4Hr1G083270.5	Barley	mitochondrion	45.01	46.03
CDY15172	Canola	plastid	67.04	44.39
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	16.64	44.12

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000003	GO:GO:0000166	GO:GO:0000226
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0005829	GO:GO:0006950	GO:GO:0006970
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009628	GO:GO:0009651
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009965	GO:GO:0009987	GO:GO:0010091
GO:GO:0010482	GO:GO:0010494	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0031129
GO:GO:0034063	GO:GO:0040007	GO:GO:0042802	GO:GO:0042803	GO:GO:0042814	GO:GO:0045604
GO:GO:0048444	GO:GO:0048530	GO:GO:0051287	GO:GO:0055114	GO:GO:2000039	UniProt:M0ZGX0
InterPro:NAD(P)-bd_dom_sf	PFAM:PF02826	EnsemblPlantsGene:PGSC0003DMG400000190	PGSC:PGSC0003DMG400000190	EnsemblPlants:PGSC0003DMT400000547	PANTHER:PTHR43254
SUPFAM:SSF51735	UniParc:UPI000296B31E	SEG:seg	:	:	:

Description

Angustifolia [Source:PGSC_GENE;Acc:PGSC0003DMG400000190]

Coordinates

chr1:-:72609101..72615070

Molecular Weight (calculated)

69504.9 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.243

Length

631 amino acids

Sequence
(BLAST)

001: MAHHNKTTSL ITQQVPLVIT LNCIEDTTLE QECLSGIAVI EHVPLSRLAE ARIESATAVL LHSLAFLPRA AQRRLRSWQL ILCLGSSDRA VDSALASDLG
101: LSRLVHVDVN RAEEVADTVM ALILGLLRRT HLLSRHTLSA SGWLGSVQPL CRGMRRCRGL VLGIVGRSAS ARSLATRSLA FNMSVLYFDV EGNGKMSRHS
201: IRFPPAARRM DTLNDLLAAS DLISLHCALT NETVQIINAD CLQHVKPGAF LVNTGSCQLL DDCAVKQLLI EGSIAGCALD GAEGPQWMEA WVREMPNVLI
301: LPRSADYSEE VWMEIREKAI SMLQSFFLDG VAPKDSVSDE EEESEIGYDN EVHQIQDVES ALQGSPSQQA IEDVAESSQK RLASVSRESP SQLQGSMVSQ
401: NSSGRSEVKR SRSGKKAKKR HGRQKSQHKV DDHLAFEKES TSHHEDGATM SGTDQGVSSS SRFASPEDLR GRKTSIESIQ ESSVEQLSKK GINLSRKSSE
501: LLKDGYVIAL HARHHPALHV SRQRVKGGGW FLDTMSDVTK RDPAAQFLVV SRSKDTIGLR SFTAGGKLLQ INRRMEFVFA SHSFDVWESW TFEGTMEECR
601: LVNCRNPLAV LDVRVEVLAA VGEDGITRWL D

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.