Factsheet for TraesCS4B01G319000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G185300.2
TraesCS1B01G193200.1
TraesCS1D01G191600.1
TraesCS2A01G218900.1
TraesCS2B01G244300.1
TraesCS2D01G224500.1
TraesCS4B01G319000.1
TraesCS4D01G315500.1
TraesCS5A01G493200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	TraesCS1A01G185300.2	AT1G01510.1	11889033
AT1G01510.1	TraesCS1B01G193200.1	AT1G01510.1	11889033
AT1G01510.1	TraesCS1D01G191600.1	AT1G01510.1	11889033
AT1G01510.1	TraesCS4B01G319000.1	AT1G01510.1	11889033
AT1G01510.1	TraesCS4D01G315500.1	AT1G01510.1	11889033
AT1G01510.1	TraesCS5A01G493200.1	AT1G01510.1	11889033
AT1G01510.1	TraesCS1A01G185300.2	AT1G01510.1	17972097
AT1G01510.1	TraesCS1B01G193200.1	AT1G01510.1	17972097
AT1G01510.1	TraesCS1D01G191600.1	AT1G01510.1	17972097
AT1G01510.1	TraesCS4B01G319000.1	AT1G01510.1	17972097
AT1G01510.1	TraesCS4D01G315500.1	AT1G01510.1	17972097
AT1G01510.1	TraesCS5A01G493200.1	AT1G01510.1	17972097
AT1G01510.1	TraesCS1A01G185300.2	AT1G01510.1	21798944
AT1G01510.1	TraesCS1B01G193200.1	AT1G01510.1	21798944
AT1G01510.1	TraesCS1D01G191600.1	AT1G01510.1	21798944
AT1G01510.1	TraesCS4B01G319000.1	AT1G01510.1	21798944
AT1G01510.1	TraesCS4D01G315500.1	AT1G01510.1	21798944
AT1G01510.1	TraesCS5A01G493200.1	AT1G01510.1	21798944
AT1G01510.1	TraesCS2A01G218900.1	AT5G15170.1	21798944
AT1G01510.1	TraesCS2B01G244300.1	AT5G15170.1	21798944
AT1G01510.1	TraesCS2D01G224500.1	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0126100-01	Rice	cytosol	72.71	86.79
VIT_03s0088g00460.t01	Wine grape	cytosol	12.4	82.28
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	98.09	80.44
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	97.9	80.28
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	83.78	68.27
GSMUA_Achr5P13770_001	Banana	mitochondrion	66.79	67.96
HORVU4Hr1G083270.5	Barley	mitochondrion	78.82	66.94
GSMUA_Achr5P10290_001	Banana	nucleus	44.08	66.19
TraesCS1B01G193200.1	Wheat	cytosol	75.95	61.71
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	66.03	53.73
KRH00851	Soybean	endoplasmic reticulum	62.02	52.67
KRH40381	Soybean	endoplasmic reticulum	61.64	52.35
PGSC0003DMT400000547	Potato	cytosol	62.79	52.14
Solyc01g095040.2.1	Tomato	nucleus	62.6	51.98
AT1G01510.1	Thale cress	cytosol	62.6	51.57
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	59.73	49.6
CDX90038	Canola	mitochondrion, plastid	59.54	48.0
GSMUA_Achr5P10300_001	Banana	cytosol	30.73	45.74
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	43.89	41.97
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	15.65	34.45
CDY15172	Canola	plastid	59.16	32.53

Protein Annotations

EnsemblPlants:TraesCS4B01G319000.1	EnsemblPlantsGene:TraesCS4B01G319000	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	InterPro:D-isomer_DH_NAD-bd	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR43254	PFAM:PF02826	SEG:seg	SUPFAM:SSF51735	MapMan:35.1	:

Description

No Description!

Coordinates

chr4B:-:609487373..609490460

Molecular Weight (calculated)

57731.4 Da

IEP (calculated)

7.055

GRAVY (calculated)

-0.379

Length

524 amino acids

Sequence
(BLAST)

001: MALFLGLLRR THLLSRHVSS SPAAVAAGCL GAVQPLCRGM RRCRGLVLGI VGRSAAARCL ATRSLAFRMS VLYFDPRYLA EGKMRRPSIV FPAAARRMDT
101: LNDLLAASDL VSLHCTLTND TMHILNGDCL QHIKPGAFIV NTGSCQLIDD CALKQLLLDG TIAGCALDGV EGPQWMEAWV REMPNVLILP RSADYSEEVW
201: MEIREKAITI LQSFFYDGVV PSSSISDEDE EISEAGNEDD QDRGTKDNHS QVFDGEHQTD ESHLTLNYEK KRATSQYKES QAPGQSSQNS GSRTEGRRSR
301: SGKKGKKRPA HRRSQKTDDL SAVESDSNYS FRRDDDNATS GRDQVVSSSS RFASPEDSKY KQKSPVESPM EITSEKKLPV VLGRKCPDTL KDGYVVALRA
401: KDNSGFHVAR QRLAGGGGWI LDVVSNATNR DPAAQFLVTF KNKDLMGLRS FVAGGKLLQI NRKMEFVFAS HSFDVWEGWV LEVEGSLLEG CKLINCRNSS
501: AVLDVSIEVL AAASEEDGVT RWLD

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.