Factsheet for Solyc01g095040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g095040.2.1
Solyc03g031820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	Solyc01g095040.2.1	AT1G01510.1	11889033
AT1G01510.1	Solyc01g095040.2.1	AT1G01510.1	17972097
AT1G01510.1	Solyc01g095040.2.1	AT1G01510.1	21798944
AT1G01510.1	Solyc03g031820.2.1	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000547	Potato	cytosol	98.57	98.57
VIT_03s0088g00460.t01	Wine grape	cytosol	10.3	82.28
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	77.5	75.93
KRH40381	Soybean	endoplasmic reticulum	71.0	72.61
KRH00851	Soybean	endoplasmic reticulum	70.52	72.12
AT1G01510.1	Thale cress	cytosol	68.94	68.4
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	66.88	66.88
CDX90038	Canola	mitochondrion, plastid	67.04	65.08
GSMUA_Achr5P10300_001	Banana	cytosol	35.97	64.49
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.29	64.07
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	63.55	62.75
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	63.39	62.6
TraesCS4B01G319000.1	Wheat	mitochondrion	51.98	62.6
Zm00001d029719_P002	Maize	cytosol	63.23	62.44
Os10t0533000-01	Rice	extracellular	63.71	61.85
Os03t0126100-01	Rice	cytosol	42.95	61.73
HORVU1Hr1G049460.1	Barley	cytosol	62.76	61.3
TraesCS1A01G185300.2	Wheat	cytosol	62.6	61.24
TraesCS1D01G191600.1	Wheat	cytosol	62.44	60.99
GSMUA_Achr5P13770_001	Banana	mitochondrion	49.76	60.97
TraesCS1B01G193200.1	Wheat	cytosol	62.28	60.93
OQU92250	Sorghum	mitochondrion	63.07	55.51
GSMUA_Achr5P10290_001	Banana	nucleus	29.79	53.87
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	43.74	50.37
HORVU4Hr1G083270.5	Barley	mitochondrion	44.85	45.87
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	16.8	44.54
CDY15172	Canola	plastid	66.72	44.18

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000003	GO:GO:0000166	GO:GO:0000226
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0005829	GO:GO:0006950	GO:GO:0006970
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009628	GO:GO:0009651
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009965	GO:GO:0009987	GO:GO:0010091
GO:GO:0010482	GO:GO:0010494	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0031129
GO:GO:0034063	GO:GO:0040007	GO:GO:0042802	GO:GO:0042803	GO:GO:0042814	GO:GO:0045604
GO:GO:0048444	GO:GO:0048530	GO:GO:0051287	GO:GO:0055114	GO:GO:2000039	UniProt:K4AZP4
InterPro:NAD(P)-bd_dom_sf	PFAM:PF02826	PANTHER:PTHR43254	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc01g095040.2	EnsemblPlants:Solyc01g095040.2.1
UniParc:UPI0002768D58	SEG:seg	:	:	:	:

Description

C-terminal binding protein AN [Source:Projected from Arabidopsis thaliana (AT1G01510) UniProtKB/Swiss-Prot;Acc:O23702]

Coordinates

chr1:-:86410834..86416663

Molecular Weight (calculated)

69758.2 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.256

Length

631 amino acids

Sequence
(BLAST)

001: MAHHNKTTSL INQQVPLVIT LNCIEDTTLE QECLSGIALI EHVPLSRLAE ARIESATAVL LHSLAFLPRA AQRRLRSWQL ILCLGSSDRA VDSALASDLG
101: LSRLVHVDVN RAEEVADTVM ALILGLLRRT HLLSRHTLSA SGWLGSVQPL CRGMRRCRGL VLGIVGRSAS ARSLANRSLA FNMSVLYFDV EENGKMSRHS
201: IRFPPAARRM DTLNDLLAAS DLISLHCALT NETVQIINAD CLQHVKPGAF LVNTGSCQLL DDCAVKQLLI EGSIAGCALD GAEGPQWMEA WVREMPNVLI
301: LPRSADYSEE VWMEIREKAI SMLQSFFLDG VAPKDSVSDE EEESEIGYDN EVHQIQDVES TLQGSPSQQA IEDVAESSQK RLASVSRESP SQLQGSMVSQ
401: NSSGRSEVKR SRSGKKAKKR HGRQKSRHKV DEHLAFEKES TSHHEDGATM SGTDQGVSSS SRFASPEDLR GRKTSIESIQ ESSVEHLSKK GINLSRKSSE
501: LLKDGYVIAL HARHHPALHV SRQRVKGGGW FLDTMSDVTK RDPAAQFLVV FRSKDTIGLR SFTAGGKLLQ INRRMEFVFA SHSFDVWESW TFEGTMEECR
601: LVNCRNPLAV LDVRVEVLAA VGEDGITRWL D

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.