CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00851
KRH40381
KRH61715

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01510.1	KRH00851	AT1G01510.1	11889033
AT1G01510.1	KRH40381	AT1G01510.1	11889033
AT1G01510.1	KRH00851	AT1G01510.1	17972097
AT1G01510.1	KRH40381	AT1G01510.1	17972097
AT1G01510.1	KRH00851	AT1G01510.1	21798944
AT1G01510.1	KRH40381	AT1G01510.1	21798944
AT1G01510.1	KRH61715	AT5G15170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40381	Soybean	endoplasmic reticulum	96.27	96.27
VIT_03s0088g00460.t01	Wine grape	cytosol	10.53	82.28
VIT_15s0046g02250.t01	Wine grape	cytosol, plastid	79.42	76.09
PGSC0003DMT400000547	Potato	cytosol	72.77	71.16
Solyc01g095040.2.1	Tomato	nucleus	72.12	70.52
AT1G01510.1	Thale cress	cytosol	71.8	69.65
Bra033258.1-P	Field mustard	cytosol, peroxisome, plastid	70.66	69.1
CDX90038	Canola	mitochondrion, plastid	70.5	66.92
GSMUA_Achr5P10300_001	Banana	cytosol	37.12	65.06
Zm00001d027450_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.64	62.99
TraesCS4D01G315500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	64.99	62.75
TraesCS4B01G319000.1	Wheat	mitochondrion	52.67	62.02
TraesCS5A01G493200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	64.18	61.97
HORVU1Hr1G049460.1	Barley	cytosol	64.51	61.61
TraesCS1A01G185300.2	Wheat	cytosol	64.18	61.4
GSMUA_Achr5P13770_001	Banana	mitochondrion	51.05	61.16
TraesCS1D01G191600.1	Wheat	cytosol	64.02	61.15
Os03t0126100-01	Rice	cytosol	43.44	61.05
TraesCS1B01G193200.1	Wheat	cytosol	63.7	60.93
Os10t0533000-01	Rice	extracellular	64.02	60.77
Zm00001d029719_P002	Maize	cytosol	62.72	60.56
OQU92250	Sorghum	mitochondrion	62.56	53.84
GSMUA_Achr5P10290_001	Banana	nucleus	29.98	53.01
GSMUA_Achr1P03730_001	Banana	mitochondrion, nucleus, plastid	42.79	48.18
HORVU4Hr1G083270.5	Barley	mitochondrion	45.87	45.87
CDY15172	Canola	plastid	70.18	45.44
GSMUA_Achr2P11860_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	16.53	42.86

Protein Annotations

EMBL:ACUP02011479	EnsemblPlants:KRH00851	EnsemblPlantsGene:GLYMA_18G237800	EntrezGene:100819434	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114
InterPro:D-isomer_DH_NAD-bd	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43254	PFAM:PF02826	ProteinID:KRH00851	ProteinID:KRH00851.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI000233E41F	UniProt:I1N3U8	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr18:-:52640533..52649537

Molecular Weight (calculated)

67877.2 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.245

Length

617 amino acids

Sequence
(BLAST)

001: MPHRNNPAPL PLVVTLNCVE DCSLEFESLA GVATVQHVPL SCLSDGKIES AAAVLLHSLA YLPRAAQRRL RPYHLILCLG SADRAVDSAL AADLGLRLVH
101: VDTSRAEEIA DSVMALFLGL LRRTHLLSRH PLSASGWLGS VQPLCRGMRR CRGLVLGIVG ISASARSLAT RSLAFKMSVL YFDARAGKGK VKFPPAARRM
201: DTLNDLLAAS DLISLHCALT NETMQIINAE CLQHVKPGAF IVNTGSSQLL DDCAVKQLLI DGTLAGCALD GAEGPQWMEA WVKEMPNVLI LPQSADYSEE
301: VWMEIREKAI SILQTFFIDG IIPKNAISDV EEESEVDNES ELSDQQYNEN ALQIIVREQT DDVHVSPDNF QKKVSTQMKE SSSQHQVSSL SQSTSARSEG
401: RRSRSGKKAK KRHTRQKSQQ KPEDPSAPEK EGTSRRDDTA MSGTDQALSS SSEDSRSRKT PIESMQEPTG AQFIKSTVRL SGNCTELLKD GYIIALFARD
501: RSALHVSRQR VKGGGWIMDS MSNVSKRDPA AQFLIIFRSK DTIGLRSLAA GGKLLQINRR MEFVFASHSF DVWENWTLEG SLQECRLVNC RNPSAVLDVR
601: VEILATVGED GVTRWLE

Best Arabidopsis Sequence Match ( AT1G01510.1 )
(BLAST)

001: MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL
101: AADLGLRLVH VDTSRAEEIA DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS RSLAFKMSVL YFDVPEGDEE
201: RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP
301: NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG
401: QQHVSQNTAV KPEGRRSRSG KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP LEVMQESSPN QLVMSSKKFI
501: GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL SNVSKRDPAA QFIIAYRNKD TVGLRSFAAG GKLLQINRRM EFVFASHSFD VWESWSLEGS
601: LDECRLVNCR NSSAVLDVRV EILAMVGDDG ITRWID

Arabidopsis Description

ANC-terminal binding protein AN [Source:UniProtKB/Swiss-Prot;Acc:O23702]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.