Factsheet for PGSC0003DMT400016355

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076860.2.1	Tomato	nucleus	95.23	95.73
VIT_18s0001g08100.t01	Wine grape	plastid	61.67	61.43
PGSC0003DMT400078676	Potato	plastid	53.45	56.68
KRH72527	Soybean	nucleus	48.81	56.53
CDY28148	Canola	plastid	50.4	55.96
AT5G49665.1	Thale cress	plastid	54.24	55.27
KRH16916	Soybean	nucleus	49.2	55.04
Bra040498.1-P	Field mustard	plastid	51.86	53.71
CDY45010	Canola	mitochondrion, peroxisome	51.46	53.3
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	42.71	46.73
Zm00001d024940_P001	Maize	peroxisome	45.09	46.13
Zm00001d004553_P001	Maize	peroxisome	44.96	45.2
GSMUA_Achr7P01890_001	Banana	mitochondrion	42.44	44.82
GSMUA_Achr5P14740_001	Banana	mitochondrion	40.72	44.36
GSMUA_Achr4P22090_001	Banana	nucleus	41.38	43.64
TraesCS2A01G045100.1	Wheat	peroxisome	43.77	43.42
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	41.91	43.17
TraesCS2D01G043700.1	Wheat	peroxisome	43.37	42.86
OQU81040	Sorghum	peroxisome	40.45	42.66
TraesCS2B01G057300.1	Wheat	peroxisome	43.5	42.6
PGSC0003DMT400059986	Potato	nucleus	28.91	29.99
PGSC0003DMT400020896	Potato	mitochondrion, plastid	27.19	27.97
PGSC0003DMT400054479	Potato	plastid	26.26	27.97
PGSC0003DMT400091492	Potato	nucleus	5.57	24.85
PGSC0003DMT400070011	Potato	nucleus	14.59	20.75
PGSC0003DMT400085780	Potato	nucleus	5.97	11.54

Protein Annotations

EntrezGene:102596867	MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009987
GO:GO:0016020	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0048364	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M1A7J2	PFAM:PF13519
PFAM:PF17123	EnsemblPlantsGene:PGSC0003DMG400006392	PGSC:PGSC0003DMG400006392	EnsemblPlants:PGSC0003DMT400016355	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF55	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0002958936	InterPro:VWF_A	RefSeq:XP_006364973.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006392]

Coordinates

chr4:+:65718469..65721489

Molecular Weight (calculated)

83708.6 Da

IEP (calculated)

9.055

GRAVY (calculated)

-0.544

Length

754 amino acids

Sequence
(BLAST)

001: MGTGWRRAFC TTIPRDRETH FVDKHAQDSQ QVNNNGGQQI PTPRSCVKLG FLSSSNPSTP RLRCKTNNKA SSNDINSLIS PKLHCKTTPK SNTKSPKTFL
101: GSNPSSPRSP FSILKNTLRL SKHNCGVCTQ SVKSGQGMAI YKAECSHTFH FPCIASHVKK QSNLVCPVCN STWKDVPLLA IHRLQQQEDQ KTPKPEEVES
201: YPNTPIKKQE KPLPNVKTYY KPEQCDYKGY NDDESLFTPT AGAKFVSIPE ANEDQEDNEE EVEEFQGFFV NPISSDEAFA NQRDNRSVEV SLMPEAAIVS
301: VGRTHETYAV VLKIKAPPPP PSPPAGNSNS GSGHFLDPAR RAPIDLVTVL DVSGSMSGAK IQMLKRAMRL VISSLGSVDR LSIVAFSATP KRLLPLKRMT
401: PQGQRSARRI IDRLVCSQGT CVGEALRKAG KVLEDRRERN PVASIMLLSD GQDEKIQGSN THSRRSSEST HVSSTRFGHI EIPVHSSGFG KKGGFSHEPA
501: EEDAFSKCVG GLLSVVVQDL KIQLDFSSGS DPAEVAAVYS YNGRPAVLGS TCVRLGDLYA EEERELLLEV KIPTMTNGSH HVLSVRCCYK DPATQEAIYG
601: REHSLLVPRP QAVRSSVPKI ERLRNLFITT RAIAESRRLI EHNELSSAMH LLSSARALLI QSGSAFVDEY VRGLEAELTE VQWRKQYQQQ IEQQKMIQRQ
701: KMNEREMNLF LDENGEPLTP TSAWRAAEKL AKVAMMKKSM NRVSDLHGFE NARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.