Factsheet for PGSC0003DMT400059986

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056140.2.1	Tomato	nucleus	98.21	98.08
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	70.56	72.25
Bra005066.1-P	Field mustard	mitochondrion	58.18	64.48
CDX74871	Canola	mitochondrion	54.06	64.43
CDX91506	Canola	mitochondrion	53.78	64.31
AT2G38970.1	Thale cress	mitochondrion	61.07	64.16
GSMUA_Achr5P20480_001	Banana	mitochondrion	52.96	60.73
PGSC0003DMT400020896	Potato	mitochondrion, plastid	60.39	59.89
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	55.98	59.68
GSMUA_Achr11P...	Banana	mitochondrion	50.21	58.4
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	50.48	57.34
GSMUA_Achr11P...	Banana	mitochondrion	41.13	55.58
Zm00001d017247_P002	Maize	mitochondrion	52.13	54.45
OQU85324	Sorghum	mitochondrion	52.41	54.2
TraesCS2D01G361900.1	Wheat	mitochondrion	51.17	53.76
TraesCS2B01G382300.1	Wheat	mitochondrion	51.31	53.67
Zm00001d051119_P001	Maize	nucleus	50.62	53.49
Os02t0619600-01	Rice	mitochondrion	51.86	53.17
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	50.89	53.16
TraesCS6D01G207700.2	Wheat	mitochondrion	51.72	52.96
TraesCS6B01G254400.1	Wheat	mitochondrion	51.72	52.96
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	51.86	52.95
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	50.76	52.71
TraesCS6A01G227300.1	Wheat	mitochondrion	51.44	52.6
OQU81931	Sorghum	mitochondrion	49.79	51.94
Os04t0508800-01	Rice	plasma membrane	50.48	51.84
Zm00001d027622_P001	Maize	mitochondrion	47.73	50.14
Zm00001d025825_P001	Maize	mitochondrion	48.56	50.14
OQU93256	Sorghum	mitochondrion	48.01	50.0
Os03t0142500-01	Rice	plasma membrane	47.04	49.28
TraesCS4B01G344100.1	Wheat	mitochondrion	47.59	48.94
TraesCS5A01G512800.2	Wheat	mitochondrion	47.59	48.94
TraesCS4D01G339200.1	Wheat	mitochondrion	47.04	48.37
HORVU4Hr1G084340.1	Barley	mitochondrion	46.91	48.23
GSMUA_Achr2P11780_001	Banana	golgi	30.67	47.25
PGSC0003DMT400054479	Potato	plastid	44.43	45.62
PGSC0003DMT400091492	Potato	nucleus	10.04	43.2
PGSC0003DMT400016355	Potato	nucleus	29.99	28.91
PGSC0003DMT400078676	Potato	plastid	27.65	28.27
PGSC0003DMT400070011	Potato	nucleus	17.74	24.34
PGSC0003DMT400085780	Potato	nucleus	9.9	18.46

Protein Annotations

EntrezGene:102583607	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ncoils:Coil	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M1C509	PFAM:PF00092	PFAM:PF14624
PFAM:PF17123	EnsemblPlantsGene:PGSC0003DMG400023339	PGSC:PGSC0003DMG400023339	EnsemblPlants:PGSC0003DMT400059986	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF71	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI00029578E9	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_006345789.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023339]

Coordinates

chr5:-:51663230..51669114

Molecular Weight (calculated)

78699.4 Da

IEP (calculated)

8.282

GRAVY (calculated)

-0.317

Length

727 amino acids

Sequence
(BLAST)

001: MVSKWGKVKL ALGLNLCTYV PKKTLDENDD SGSSTVSESE RHSGAALISP ATADWDVAPA TPRSQVLKLS KSLSRSSKKT CSICLASMKR GDGHAIFTAE
101: CSHSFHFQCI ASNVKHGNQV CPVCRAEWKE IPLQFPSLDP PIGRARVNPV DWPQNNALMT VIRRLPTTRP TPNRHISPLF QAPEPAIFDD DESLGHQLNS
201: TEKSASDKSS IDSCESCDNR KVKIETYPEV PAVSRSSASD NFTVLVQLKA PGSVSVQEPG KNQVNLSQVS QTPRAPVDLV TVLDISGSMA GTKLALLKRA
301: MGFVIQNLGP NDRLAVIAFS STARRLFPLR RMSETGRQQA LQAVNSLVAN GGTNIAEGLR KGAKIMEDRK EKNSVTSIIL LSDGQDTYTV SNNSGSRQQQ
401: PNYKLLLPLS IHGGNSSGFK IPVHAFGFGA DHDASSMHSI SEISGGTFSF IETEGVIQDA FAQCIGGLLS VVVKELQVSI ECLHPGVRLS SLKAGSYPNC
501: LMSDGHMGTI DVGDLYADEE RDFLVSINIP TESSCAETSL LKVKCVYVDP FTKEKVSIRS EDLRIKRPEK AGQESVLIEV DRQQNRVRVA EAMAQARAAA
601: EKGDLVGATS ILENSRKLLS ESQSAKSHDR LCVALDAELK EMQERMASRN VYEASGRAYI LSGLSSHSWQ RATARGDSTG GSSLVQAYQT PSMAEMVTRS
701: QATLLASPSA QRNVQPVWSF ASQPKPR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.