Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g032370.1.1 | Tomato | endoplasmic reticulum, extracellular | 48.52 | 70.69 |
| PGSC0003DMT400085780 | Potato | nucleus | 92.9 | 40.26 |
| VIT_19s0135g00160.t01 | Wine grape | nucleus | 22.49 | 13.24 |
| VIT_15s0024g01790.t01 | Wine grape | nucleus | 21.89 | 12.89 |
| PGSC0003DMT400054479 | Potato | plastid | 44.38 | 10.59 |
| PGSC0003DMT400059986 | Potato | nucleus | 43.2 | 10.04 |
| PGSC0003DMT400020896 | Potato | mitochondrion, plastid | 43.2 | 9.96 |
| PGSC0003DMT400070011 | Potato | nucleus | 24.85 | 7.92 |
| PGSC0003DMT400078676 | Potato | plastid | 26.63 | 6.33 |
| PGSC0003DMT400016355 | Potato | nucleus | 24.85 | 5.57 |
| CDX93598 | Canola | endoplasmic reticulum, golgi, mitochondrion, vacuole | 0.59 | 0.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400091492 | EnsemblPlantsGene:PGSC0003DMG400041063 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF97 | PFAM:PF17123 | PFscan:PS50089 | PGSC:PGSC0003DMG400041063 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029582BB | UniProt:M1DMR2 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400041063]
Coordinates
chr2:+:16113613..16120768
Molecular Weight (calculated)
18910.0 Da
IEP (calculated)
10.799
GRAVY (calculated)
-0.354
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMVWHKLKK ALSLKRKDNN SQNETHHSKS PAIPSSPSSL SRLPSPTTRS SKGTCVICLR SMKAEKGKAI FTAECMHSFH FSCIGENVKH GNLLFPICRC
101: KWKEIPFQFA TDVTIVRRIR VLHRVKHSRP LPTVFPPPPQ HVQFSDAGSS IIDVIGYNIG SDVQHSGRG
101: KWKEIPFQFA TDVTIVRRIR VLHRVKHSRP LPTVFPPPPQ HVQFSDAGSS IIDVIGYNIG SDVQHSGRG
001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR
Arabidopsis Description
Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]
SUBAcon: [mitochondrion,plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.